Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02664 ATGTGGGGTAATTACTCTGGACTAGTTCTACCATTCTTTTGCTTCCTTTTGGCTGTAAACAGCAGCATTAAGCTTGCTTCAGCTGATATTCGATGCATGGAAACAAGGTGCAGCAACCATGCTCCTGATATTCACTACCCTTTCAGACTTAAAGACAGGCAACCACAAAGGTGTGGTAGAACAGGATTTGATCTTTTATGCACTGAGAACCAACAGACCATGCTAGAATTGCCACTTTCAGTTAAACTTTTAGTCAAAAATATCGATTACAAGTCCCACATGATTCATGTCACTGTCCCAGATGGGTGCCTTCCAAGACTCCTCTCAAATTTCAACATATCTACCACTCCCTTTCACTACCTTGAAAATTCTAATGCCAATTACACCTTATTCAATTGTTCATCCATGAACACCGCTTTGCAATCTTATTCTTCCATTCCTTGCCTTTCTGCTCCTGGATACCAAGTTTATGCCTTGAATTCCTCACTTCACATCAAAGATGTTACCTTGTCGTATTGTACTAAGTTGTATGACATATCATTGGTTCCAAATGATGTTTTTAGCCAGCAGGATGATCTTGTTTTAAGCTGGGGTAAAAGCTGTGGCAATGAAACAGAACATGAATGTTACAGATTTGACCACAAATCCAAAGGTGCAAGGAAAAAAGTGGAGATTTTAGTACCAATAGTATCACTTCTCCTAATTTTGCTGGTAGTCCTTGTATTGTATCATGTACGCCACATAAGTCAGAAAGATAAAGAAAACCAAGCAAGAATCGAGAAGTTCTTGGAGAATTACAGAGCACTAAAACCCACGAGATATTCCTATGCAGATGTCAAGAGGATCACGAACCATTTTAAGAACGAATTGGGGCAGGGAGCATATGGAACTGTGTATAAAGGTAAACTATCAGGTGAAATTTTTGTTGCAGTTAAGCTTCTCAAAACCTCCACTGGGAACGGACCAGAGTTCATCAATGAAGTTGGAACAATGGGTCAAATTCATCATGTCAATGTGGTTCGCTTAGTTGGCTTTTGCGCAGATGGACACACACGTGCTCTAGTATATGAGTACTTGCCAAATGGGTCATTGCAGAAATTCATATCCACAACAGATTTTAAAAACCATTTCCTGAGCTGGGAGAAGCTGCAAGAAATTGCTCTTGGAATAGCCAAAGGGATTGAGTATCTTCATCAAGGGTGTGACCAGAGGATCCTACACTTTGATATTAAACCCCACAATATCTTACTTGACCACCATCTTACTCCTAAGATATCTGATTTTGGTTTGGCTAAGTTGTGTTCTAAGGATCAAAGTGCAGTTTCCATGACTGCTGCTAGGGGAACTGTAGGCTATATAGCACCTGAAGTGTTCTCTAGGAACTTTGGGAATGTGTCATATAAGTCTGATGTGTATAGTTTTGGAATGTTATTGCTTGAGATGGTTGGAGGAAGACAGAATGTTGATGTAACTGCAAAGAAAAGTGGTCTAGGCTACTTCCCAGAGTGGATTTACAATCTATTAGAACAAGGGGATGATCTGAGGGAACACATTGAGGTAGAGAAATATGCTAAAATAGCTAAGAAGCTTGCAATTGTGGGACTCTGGTGCATTCAATGGCACCCAGTTGATCGTCCTTCTATGCAAGTTGTGGTTCATATGTTGGAAGGAGATGGAGACAATTTAAGTATGCCACCCAATCCATTTGCTTCTGCAGATCCAATTATAATGAATGTGAATATGTTTGGGAGGCAGCTTACTAGGAACTAA 1770 0.4011 MWGNYSGLVLPFFCFLLAVNSSIKLASADIRCMETRCSNHAPDIHYPFRLKDRQPQRCGRTGFDLLCTENQQTMLELPLSVKLLVKNIDYKSHMIHVTVPDGCLPRLLSNFNISTTPFHYLENSNANYTLFNCSSMNTALQSYSSIPCLSAPGYQVYALNSSLHIKDVTLSYCTKLYDISLVPNDVFSQQDDLVLSWGKSCGNETEHECYRFDHKSKGARKKVEILVPIVSLLLILLVVLVLYHVRHISQKDKENQARIEKFLENYRALKPTRYSYADVKRITNHFKNELGQGAYGTVYKGKLSGEIFVAVKLLKTSTGNGPEFINEVGTMGQIHHVNVVRLVGFCADGHTRALVYEYLPNGSLQKFISTTDFKNHFLSWEKLQEIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDHHLTPKISDFGLAKLCSKDQSAVSMTAARGTVGYIAPEVFSRNFGNVSYKSDVYSFGMLLLEMVGGRQNVDVTAKKSGLGYFPEWIYNLLEQGDDLREHIEVEKYAKIAKKLAIVGLWCIQWHPVDRPSMQVVVHMLEGDGDNLSMPPNPFASADPIIMNVNMFGRQLTRN. 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02664 589 Pfam Wall-associated receptor kinase galacturonan-binding 32 97 IPR025287 GO:0030247
Seca8g02664 589 ProSitePatterns Protein kinases ATP-binding region signature. 290 312 IPR017441 GO:0005524
Seca8g02664 589 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Seca8g02664 589 FunFam S-receptor-like serine/threonine-protein kinase 250 358 - -
Seca8g02664 589 ProSiteProfiles Protein kinase domain profile. 284 570 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02664 589 PANTHER RUST RESISTANCE KINASE LR10-RELATED 255 569 IPR045874 GO:0004672
Seca8g02664 589 Pfam Protein kinase domain 286 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02664 589 Gene3D Transferase(Phosphotransferase) domain 1 359 563 - -
Seca8g02664 589 Gene3D Phosphorylase Kinase; domain 1 256 358 - -
Seca8g02664 589 FunFam PR5-like receptor kinase 359 566 - -
Seca8g02664 589 SUPERFAMILY Protein kinase-like (PK-like) 266 556 IPR011009 -
Seca8g02664 589 SMART serkin_6 284 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02664 Seca-Chr8 62401619 62404372 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02664 226 569 Receptor kinase-like Gene Family AT4G18250 50.565 7.80e-110 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02664 Pkinase 3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02664 - - qsu:112026389 681.404