Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02663 ATGTCTTGGAAAAGGCTTCTCATTCATGTGACACTTTTTGTGATCCTCCAATACCCACTGCCCTGCCTAACAGAAACAAATCACCAATGTCCCCCTTCATCTTGTGGCAATATACACAGTATCAGCTACCCTTTTAGGCTAGAAAGTGATCCTCAAAACTGTGGAGACCCCAAATATGAACTGGCATGTGAGAACAGTCAAACAATACTGAATCTATACAATGGCAAATACATTGTACATGCCATCAACTACAACAATTCCACAATAAGGGTCACAGATTTAGGGGTCAAGAAAGATAATTGCTCTTCCATTCCTCTCTACACTTTAACACATGACAACTTCAGCACTGAACAACCTTATAGCTTGTTTGGTGGCAGTAACTTAGATGTCATAGCATTTATGAGCTGTGGAGCCCCAATTATTTCCCCTCTTTATATGGACATTACATCTTGTACCAAAGGTTTCAACTCTTCTAATTCTTCTATTTTTTCTTCACATAAGTACACTTTTGCTGTATTTGGTGACTTGAAGATCTCTGAGTTAGAGGATTCATGCAGCATACTTGTCATGGCTATGATTTCAAATTTAAGCAGAGGTGATCTGAACCTTTCATATGGGAATATCCACCAGCAACTGGTTTATGGGGTGGAGCTTTCTTGGCATGATATATTCTGCCAAGAGTGTGAAGGCAGGGGCTACTGTAAGTTAAACAACAAGAATGAGGTCATTGGTTGTGCTAGAAGTAGACCTTGTAGCCATGAGCATATATCCTCTTTTAAATGTGTTTTTAAAGAATTTTTCCATACATTTGAAGACTTAACTGAAGGTCCTCACAAAATTGGCCTCATCATTGGACTAATTCTTCTCATAAGAATCATAGGTGGGGTACTATTTGTAACTATCTATATGACATATAAATGGAGAAGGAGGCATTTATCTGCATATGACTCAGTTGAAGAGTTCCTTAAAACTCACAACAATCTCATGCCAATAAGATACTCTTACTCAGACATCAAAAAGATCACCAAAGGATTCAAGCATAAACTTGGTGAGGGAGGCTATGGCTCTGTTTACAAAGGAAGGCTTCGCAATGGAGGTTTAGTAGCAATCAAGATTCTAGGTGGCAAATCCAAAGCTAATGGTCAAGAATTTATCAATGAAGTTGCTACCATTGGAACAATCCATCATGTTAATGTTGTGCACCTTATTGGCTTCTGTGTTGAGAAAACAAAAAGAGCTCTTGTCTATGAGTTCATGCCTAATGGATCCCTTGACAAGCACATTTTCTTAAGAGAAGGAAAGATCCCATTAAGTTGGGAGAAAATGTTTGAGATTGCACTTGGAGTGGCTCGTGGTATTGAATATCTGCATAGAGGGTGTGACATGAGGATTTTGCATTTTGACATAAAGCCTCACAATATTCTTCTTGATGAGAATTTCACTCCAAAGGTTTCAGATTTTGGGTTGGCAAAGTTGTATCCAACTGATAACAGCATAGTGTCTCTGACAGCTGCAAGAGGAACCATGGGCTACATGGCACCAGAGTTGTTCTATAAGAACATTGGAGGGGTCTCATATAAAGCTGATGTTTATAGCTTTGGAATGTTGCTAATGGAAATGGCAAGTAGGAGAAAGAATATGAATGAGCATGCAGACCGTTCTAGCCAAGTTTATTTCCCTTCTTGGGTTTACGACCAGTTTAGTGAAGGGAAGGAAATAGAAATGGAGAATACTACAGAAGAGGATAAGAAAATATTGAAGAAGATGATCATAGTTGCATTGTGGTGTATACAGATGAAACCCTGTGATCGCCCTTCAATGAATAAAGTGGTTGAGTTGCTTGAAGGGGATGTTGAGTCATTGCAAATGCCTCCCAAGCCGTTTCAAACTCCAAAGGGGATGCCAGTAGGCATTGGAATGTTCAGAAATCTACCTTGGTTGCCACCTGGGAATTCTTCAAATTCACTTACCATAGTTGTAAATGGTCGTCACTAA 1995 0.393 MSWKRLLIHVTLFVILQYPLPCLTETNHQCPPSSCGNIHSISYPFRLESDPQNCGDPKYELACENSQTILNLYNGKYIVHAINYNNSTIRVTDLGVKKDNCSSIPLYTLTHDNFSTEQPYSLFGGSNLDVIAFMSCGAPIISPLYMDITSCTKGFNSSNSSIFSSHKYTFAVFGDLKISELEDSCSILVMAMISNLSRGDLNLSYGNIHQQLVYGVELSWHDIFCQECEGRGYCKLNNKNEVIGCARSRPCSHEHISSFKCVFKEFFHTFEDLTEGPHKIGLIIGLILLIRIIGGVLFVTIYMTYKWRRRHLSAYDSVEEFLKTHNNLMPIRYSYSDIKKITKGFKHKLGEGGYGSVYKGRLRNGGLVAIKILGGKSKANGQEFINEVATIGTIHHVNVVHLIGFCVEKTKRALVYEFMPNGSLDKHIFLREGKIPLSWEKMFEIALGVARGIEYLHRGCDMRILHFDIKPHNILLDENFTPKVSDFGLAKLYPTDNSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMASRRKNMNEHADRSSQVYFPSWVYDQFSEGKEIEMENTTEEDKKILKKMIIVALWCIQMKPCDRPSMNKVVELLEGDVESLQMPPKPFQTPKGMPVGIGMFRNLPWLPPGNSSNSLTIVVNGRH. 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02663 664 ProSitePatterns Serine/Threonine protein kinases active-site signature. 464 476 IPR008271 GO:0004672|GO:0006468
Seca8g02663 664 PANTHER RUST RESISTANCE KINASE LR10-RELATED 315 630 IPR045874 GO:0004672
Seca8g02663 664 Gene3D Transferase(Phosphotransferase) domain 1 419 629 - -
Seca8g02663 664 CDD STKc_IRAK 349 616 - -
Seca8g02663 664 ProSitePatterns Protein kinases ATP-binding region signature. 349 371 IPR017441 GO:0005524
Seca8g02663 664 FunFam PR5-like receptor kinase 419 626 - -
Seca8g02663 664 FunFam serine/threonine-protein kinase PBS1-like 313 418 - -
Seca8g02663 664 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Seca8g02663 664 SUPERFAMILY Protein kinase-like (PK-like) 324 614 IPR011009 -
Seca8g02663 664 Pfam Protein kinase domain 346 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02663 664 Gene3D Phosphorylase Kinase; domain 1 317 418 - -
Seca8g02663 664 ProSiteProfiles Protein kinase domain profile. 343 621 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02663 664 SMART serkin_6 343 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02663 Seca-Chr8 62396406 62399947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02663 12 627 Receptor kinase-like Gene Family AT5G38260 37.242 3.48e-113 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Seca8g02663 Pkinase 4.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02663 - - cam:101507916 1055.05