Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02651 ATGAATACTACTCAGCAAGAAAAGTTTGTTAGGTTTCAGGATGGTAACGCAGAGAAGGTTTCTGAGAGGAATTATCCTGCAATTAACATAACACACTCGGGGAGATTTAGAACTAAGTTGAGTTCATTTTCTGAGAAGTTCCAAAGGGGATTGGAATCTGGTTCTGAGAAGTTAAAGAGATTCAGGACATCATTTGAATCTTTTCCCTATAAGTATAATGGTGCATTTTCTAGAAGCTTTGGTTCTAAAAGGAAAATCCTTGATCCACAGGGTCCATTCCTTCAAAAGTGGAACAAGATATTTGTGTTATTATGTGTTATTGCAGTATCACTGGATCCTTTGTTCTTTTATGTCCCTGTGATTGATGATGTGAAGAAATGTCTTTCATTGGACAGCAAGATGGAGATTACAGCAACTGTTTTAAGAACTTTCTCTGATGTTTTATATATAATCCACATGTTTTTCCAGTTTCGTACTGGATTCATTGCTCCCTCTTCTCGAGTATTTGGAAGAGGTGTTCTGGTTGAAGATTCTTGGGCAATAGCCAGGAGGTATTTGTCATCATATTTCTTAGTTGACATTCTTGCGATTCTTCCACTCCCACAGGTGGTGATTCTAATTATCATTCCAAAGATGAGAGGCTTTAAATCACTCAATACAAAGAATTTGCTGAAATTTGTTGTTTTCTTCCAATATGTGCCTCGTTTAGTACGAATAATTCCATTATATAAAGAAGTTACGAGGACCTCTGGAATTCTCACTGAAACAGCTTGGGCTGGAGCTGCATTTAATCTCTTTCTCTACATGCTTGCAAGTCATGTAAGTTTATGCTACATTCTTATATTATATGTTACTAGAAAATTTTCTATAGAACGAGAAACCACATGCTGGCAAGAAGCCTGTCGAAGCAATATAATGTGTAACAAGGCTGATATGTATTGTAACAACCAATGGGGAGGGTTGAGCAAAATTTCAACATTCCTGAATGCTTCTTGCCCAATAAACGACGAAGATAAAAAGCTCTTTGATTTTGGAATATTCCTTGATGCCCTTCAATCTGGTGTTGTGGAGTCTAGAGACTTTCCTCAAAAATTCTTTTACTGTTTTTGGTGGGGCCTAAAAAATTTGAGTTCTCTTGGTCAGAACCTGGCAACAAGTACCGATGTTTGGGAAATCTGTTTTGCAGTTTTCATTTCCATATCTGGTTTGGTATTATTTTCATTCCTCATTGGAAATATGCAGACGTATTTGCAGTCAACAACAACAAGGTTGGAGGAGATGAGAGTAAAAAGGAGGGATGCAGAACAGTGGATGTCTCATCGATTGCTTCCTGATAGCCTGAGAGAAAGAATCAAACGATATGAACAGTACAAATGGCAAGAAACTAGAGGTGTAGATGAAGACAATTTGATTCATAATCTTCCCAAGGATTTAAGAAGGGATATTAAGCGTCATCTTTGCTTGGCTTTGCTGATGAGAGTGCCAATGTTCGAGAAAATGGATGAGCAACTTTTGGATGCTATGTGTGACCGACTCAAGCCAGTGCTTTACACAGAAGAAAGCTACATTGTCCGTGAAGGAGACCCTGTTGATGAGATGCTCTTCATAATGCGAGGCAAGCTATTGACTATGACAACTAATGGTGGAAGAACTGGCTTCTTCAACTCTGAGTACCTCAAGGCTGGTGATTTCTGTGGAGAGGAGCTTCTGACATGGGCTTTAGATCCTCATTCCTCATCCAACCTTCCCATCTCAACCAGGACTGTCCAGACCCTTTCTGAAGTTGAAGCCTTCGCACTGAAAGCTGATGATCTGAAATTCGTGGCGTCTCAGTTCCGGCGCCTCCACAGCAAGCAGTTGCGCCACACTTTCAGGTTCTACTCACAGCAATGGCGCACGTGGGCTGCGTGTTTCATACAAGCAGCCTGGCGGCGCTACAGTAGGAAGAAGCTTGAAGAGTCACTTGTTGAAGAGGAGAATAGACTGCAAGATGCATTGGCAAAGGCTGGTGGTAGCTCACCAAGTCTTGGTGCCACAATATATGCTTCAAGGTTTGCTGCCAATGCACTCAGATTATTGCGTCGTAGCGGCACCAGGAAGACAAGGGTGCCGGAGAGAATACCCCCCATGCTGCTTCAGAAGCCTGCAGAACCTGACTTTACTGATGAAGAGCAATAG 2178 0.4128 MNTTQQEKFVRFQDGNAEKVSERNYPAINITHSGRFRTKLSSFSEKFQRGLESGSEKLKRFRTSFESFPYKYNGAFSRSFGSKRKILDPQGPFLQKWNKIFVLLCVIAVSLDPLFFYVPVIDDVKKCLSLDSKMEITATVLRTFSDVLYIIHMFFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLVDILAILPLPQVVILIIIPKMRGFKSLNTKNLLKFVVFFQYVPRLVRIIPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVSLCYILILYVTRKFSIERETTCWQEACRSNIMCNKADMYCNNQWGGLSKISTFLNASCPINDEDKKLFDFGIFLDALQSGVVESRDFPQKFFYCFWWGLKNLSSLGQNLATSTDVWEICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIKRYEQYKWQETRGVDEDNLIHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDAMCDRLKPVLYTEESYIVREGDPVDEMLFIMRGKLLTMTTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSNLPISTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSRKKLEESLVEEENRLQDALAKAGGSSPSLGATIYASRFAANALRLLRRSGTRKTRVPERIPPMLLQKPAEPDFTDEEQ. 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02651 725 SUPERFAMILY cAMP-binding domain-like 425 618 IPR018490 -
Seca8g02651 725 Coils Coil 648 668 - -
Seca8g02651 725 MobiDBLite consensus disorder prediction 698 725 - -
Seca8g02651 725 CDD CAP_ED 496 627 IPR000595 -
Seca8g02651 725 ProSiteProfiles cAMP/cGMP binding motif profile. 496 580 IPR000595 -
Seca8g02651 725 Gene3D - 98 420 - -
Seca8g02651 725 Gene3D Jelly Rolls 494 614 IPR014710 -
Seca8g02651 725 Pfam Cyclic nucleotide-binding domain 516 607 IPR000595 -
Seca8g02651 725 Gene3D Helix hairpin bin 422 487 - -
Seca8g02651 725 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 77 720 - -
Seca8g02651 725 FunFam Cyclic nucleotide-gated ion channel 1 423 487 - -
Seca8g02651 725 SMART cnmp_10 496 627 IPR000595 -
Seca8g02651 725 Pfam Ion transport protein 97 423 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Seca8g02651 725 FunFam Cyclic nucleotide-gated ion channel 1 494 612 - -
Seca8g02651 725 SUPERFAMILY Voltage-gated potassium channels 88 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02651 Seca-Chr8 62162976 62170641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02651 5 724 Ion Channels AT5G53130 77.210 0.0 1125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02651 K05391 - gmx:100801032 1261.51