LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca8g02650	ATGGAGTGCAACAAAGATGAGGCAGCTAGGGCCAAAGAAATAGCAGAGAGGAAATTTTCTGAAAGGGAATATACTGGTGCAAAAAGGTTTGCTCTCAAGGCTGTGAGTCTGTATCCTGCGCTGGAGGGTCTTTCCCAGTTTTTAACCACTGTTGATGTTTATATCTCTGCTGAGAATAAAATAAATGGAGAAATGGATTGGTATGGTATACTTGGAGTGAGTCCCTTTGCTGATGATGAGATAGTTAGAAAGCAGTACAGGAAGTTGGCTCTCACTCTTCATCCTGACAAAAACAAGTCTTTAGGTGCAGAGGGTGCATTTAAGCTTGTTTCAGAGGCATGGAGTTTACTATCAGATAAGGTCAAGAGACTAGCATATAACCAGAATAGGAGTTCAGAAGGTTTTCAGCATTATGCTCCCAACCATGTCGGGTCTCGATCAGAAGCACCCAGTTCAAATGTTTTTTATAATCTTAAGAAGAATGCAACTTCAAATGAGAGAACTGGAAATAATAATGTGCAGCCACCTGCAACCTCCATTCCTCCACATAATATAGCTGGTACCTTTTGGACTATCTGTAATCGATGCAGGACACATTATGAGTATCTCAGGGTTTATTTGAATCACACCCTTTTATGTCCCAATTGTAATGATGCTTTTGTGGCCATAGAGAAGGGTCCACCTCCGAATGTTGTCAAGTCATCTAAATGGGCTCCTCGGCAACATCATCAGAAGTCACAACATCATGCTGGAAGGAATCACCCTATGAATCCAGGAAGAACATGTGCAGTTTCTCAAAACACAGATTCTTTTAATAATACAAACTTCCAGTGGGGTCCTCACTCAAGAATGGCTGGTTTTGTTAACACAGATGAACCATCATCTGTCGCTGCTGCAAGTGTTAAGCAGCAGGCAAGTGAGAAAAGAAGAGAATCTGAGGGAGCCCCATCAATTGCTGCATGGGAGAGGAGTCGCATGTATAAGAGATCTGATGGTTCTTTTAGTGATGTTGGAAATCCTATGAAGAAAATAAAGAAAGATGATATTTACATGAACAGGGTAAATCATATGACCATGGGAAATGGAGCAACTGGTTTGGGCAGTTTTTATGAATCAAGAAAGGCCAACATAGGAACAGAAAGGACTTGTGGTTTTTCAGGTGTTACTAGCAAGCACTGCAGCATAAGAGAGTTGTCAATGTCTGAATTACGAAAGATGTTGATCGGTAAGGCACAGATCGAAATTCGCAAGAAACTTCAAGATTGGAGATCAATGGCTGAAGCTAAGGTTACAAACAAGGACAAAGGAAATGAGAGGCAGAAAAGCACATTTAATGACAAAACAACTGGTCCAGAGAAGCATGGAGGTTCCACTATAAATGGTAACAGGCATGTGGACAGTGATTCTATCCCAGTCACATCTGATGACATGGTAAAGGATAGGAGCCAATCCTATGTTACAATCAATGTTCCAGATTCTGATTTTCACAATTTTGACTTGGATAGAGCTGAAAATTCCTTTGAGGAGGACCAGGTCTGGGCTGCTTATGATGATGATGATGGAATGCCTCGATATTATGCTAGAATTCACAAGGTGATCTCCACAAAGCCATTCAAAATACGGATCAGTTGGCTTAACTCTCGAAGCAACAGTGAATTGGGCCCAATAGATTGGGTAGGTTCTGGTTTTTACAAAACTTGTGGGGATTTCAGGACTGGTAAGCATGAAATAACTGAATCATTAAATTCATTTTCACATAAGGTAAGGTGGACAAAAGGCACCAGAGGAGTTGTTCGCATCTTTCCTGGAAAGGGGGAAGTCTGGGCGCTCTATAAAAACTGGTCTCCTGATTGGAATGAAAATACTCCAGATGAAGTGATACACAAGTATGATATGGTGGAGGTGCTTGAAGATTTCAATGAGGAGGAAGGTGTGTTAGTTACACCACTTGTCAAGGTTGATGGTTTTAAGACAGTGTTTCACAGGGACAGCCGTGATCAGGTAAGGAAGATTCCAAAAGTTGAGATGTTTCGCTTCTCTCATCAGGTTCCTAACTACTTGCTTACTGGACAAGAAGCTCATAATGCTCCAAAGGGCTGTAGAGAGTTGGATCCTGCAGCTACTCCTTTAGATCTTCAGACAACAACAGAAGCTAATGAGGCATTGGATAATGTTGGAAAATCTAAGGAAGACAAATTGCCCATTTCACCTGAAAAACGTGCATCTGGTAAGGCAGAGAATGCTTCGTAA	2250	0.4142	MECNKDEAARAKEIAERKFSEREYTGAKRFALKAVSLYPALEGLSQFLTTVDVYISAENKINGEMDWYGILGVSPFADDEIVRKQYRKLALTLHPDKNKSLGAEGAFKLVSEAWSLLSDKVKRLAYNQNRSSEGFQHYAPNHVGSRSEAPSSNVFYNLKKNATSNERTGNNNVQPPATSIPPHNIAGTFWTICNRCRTHYEYLRVYLNHTLLCPNCNDAFVAIEKGPPPNVVKSSKWAPRQHHQKSQHHAGRNHPMNPGRTCAVSQNTDSFNNTNFQWGPHSRMAGFVNTDEPSSVAAASVKQQASEKRRESEGAPSIAAWERSRMYKRSDGSFSDVGNPMKKIKKDDIYMNRVNHMTMGNGATGLGSFYESRKANIGTERTCGFSGVTSKHCSIRELSMSELRKMLIGKAQIEIRKKLQDWRSMAEAKVTNKDKGNERQKSTFNDKTTGPEKHGGSTINGNRHVDSDSIPVTSDDMVKDRSQSYVTINVPDSDFHNFDLDRAENSFEEDQVWAAYDDDDGMPRYYARIHKVISTKPFKIRISWLNSRSNSELGPIDWVGSGFYKTCGDFRTGKHEITESLNSFSHKVRWTKGTRGVVRIFPGKGEVWALYKNWSPDWNENTPDEVIHKYDMVEVLEDFNEEEGVLVTPLVKVDGFKTVFHRDSRDQVRKIPKVEMFRFSHQVPNYLLTGQEAHNAPKGCRELDPAATPLDLQTTTEANEALDNVGKSKEDKLPISPEKRASGKAENAS.	750

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca8g02650	749	MobiDBLite	consensus disorder prediction	716	749	-	-
	Seca8g02650	749	Gene3D	DnaJ domain	63	172	IPR036869	-
	Seca8g02650	749	MobiDBLite	consensus disorder prediction	231	258	-	-
	Seca8g02650	749	ProSiteProfiles	dnaJ domain profile.	66	130	IPR001623	-
	Seca8g02650	749	MobiDBLite	consensus disorder prediction	295	317	-	-
	Seca8g02650	749	ProSitePatterns	Nt-dnaJ domain signature.	107	126	IPR018253	-
	Seca8g02650	749	MobiDBLite	consensus disorder prediction	428	474	-	-
	Seca8g02650	749	Pfam	Domain of unknown function (DUF3444)	487	692	IPR024593	-
	Seca8g02650	749	PANTHER	BNAC03G44070D PROTEIN	1	709	-	-
	Seca8g02650	749	Pfam	DnaJ domain	66	127	IPR001623	-
	Seca8g02650	749	PRINTS	DnaJ domain signature	86	101	IPR001623	-
	Seca8g02650	749	PRINTS	DnaJ domain signature	68	86	IPR001623	-
	Seca8g02650	749	PRINTS	DnaJ domain signature	102	122	IPR001623	-
	Seca8g02650	749	MobiDBLite	consensus disorder prediction	723	739	-	-
	Seca8g02650	749	MobiDBLite	consensus disorder prediction	449	468	-	-
	Seca8g02650	749	SMART	dnaj_3	65	122	IPR001623	-
	Seca8g02650	749	CDD	DnaJ	66	119	IPR001623	-
	Seca8g02650	749	SUPERFAMILY	Chaperone J-domain	58	126	IPR036869	-
	Seca8g02650	749	MobiDBLite	consensus disorder prediction	428	448	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca8g02650	Seca-Chr8	61899622	61903140	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca8g02650	4	228	SUVH1 or 3-interacting DNAJ domain-containing protein superfamily	AT2G01710	32.618	4.32e-30	120

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca8g02650	-		-	gmx:100792212	1171.76