Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02638 ATGCATGACCATCAGAAGAAAGGTTTTCAATTTATTTGGCAAAATATTGCAGGGTCAATACAACTAACACTTATGGAAGTAGAATCTGAAAGAAGAGGTGGTTGTGTGATATCTCATACTCCTGGAGCTAGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGTTATTCCCAGATAAAAAGCCTCTGACCCTTGCTCCAAAAACTACACTTTATACTTGGTACAAGGAATTCATCAATGATGTCAAGCATGTTTTGGATTTCCTTGGAAAGATTAAAAAGTGGCATCTACACCCTAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACGAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGGGAAAACACTGGGATCCTTATACTCGATGAAGGGCACAATCTTAGAAGCACCAAGTCAAGGTTGAGGAAAGGGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTTTCTGGTACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCAAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATATAAAACAAAAGAAGGGAAATGATAAAAGTCCAGAGAAAGCACAACATTTACTTGAGACACATGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTAACTCAAGTGATGATAAAGTGAGGATGCAGGGTTTGAACATGTCGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGACAAGCTTTCTGGTTTGTAA 819 0.3651 MHDHQKKGFQFIWQNIAGSIQLTLMEVESERRGGCVISHTPGARKTFLVIAFLVSYLKLFPDKKPLTLAPKTTLYTWYKEFINDVKHVLDFLGKIKKWHLHPSVLVMGYTSFLSLTRENSKYEHKKYMAKALRENTGILILDEGHNLRSTKSRLRKGLMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDIKQKKGNDKSPEKAQHLLETHARKFFLDDIANKINSSDDKVRMQGLNMSRKITSGFIDVYESGNSDKLSGL. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02638 272 Gene3D - 1 233 IPR038718 -
Seca8g02638 272 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 272 IPR044567 GO:0080188
Seca8g02638 272 Pfam SNF2-related domain 24 221 IPR000330 GO:0005524|GO:0140658
Seca8g02638 272 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 193 IPR027417 -
Seca8g02638 272 SMART ultradead3 1 203 IPR014001 -
Seca8g02638 272 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 26 191 IPR014001 -
Seca8g02638 272 Coils Coil 272 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02638 Seca-Chr8 61113386 61114305 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca8g02638 SNF2_N 1.8e-12 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02638 K10875 - mnt:21390362 389.423