Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02635 ATGGATGACACCTTATCTGATATTTTCCAAGACACAAACTTTGGTGGAGACGATCTCTTTGCCATTTTGGAGAGCCTAGAAGACTTCCAAGATTTTCCATCTCCCATCAATAATGAAGCTTTTGTGAACACAACACCGAGAGAGAATGAGCGAAACACTACTAGAATGGTTTCAACAACATCTTCAAGTGCTCCACAAGATTCTGAAACTGAGCCTGAAACCTCATCCAAAAGCTGCAAGAGACAGAAACTTGGCCCCACATCGACGGAGGAACCAAACGGTGATGGACAACAGAAAATATCTCATATCACGGTGGAACGCAACCGAAGAAAGCAAATGAATGAGCATTTGTCCGTCTTAAGGTCCCTTATGCCTTGCTTTTATGTCAAACGAGGAGACCAAGCATCAATAATTGAAGGTGTGGTTGATTACATCAACGAGCTACAGCAAGTGCTACAATGCCTTGAGGCCAAGAAACACAGGAAAGTTTACAATGATGTACTAAGCCCTAGGCTAGTTTCAAGCCCAAGGCCTTCACCACTAAGTCCAAGAAAACCACCACTGAGCCCTAGAATAATGAACTTACCCATTAGTCCAAGAACACCACAACCAAGTAGCCCTTACAAACCGAGGTTGCAACAAGGTTACCTTTCCCCTACCATATCAAACTCTGTTGAGCCATCTCCTACTACTTCTTCGGCTTCTTCCATTAACGACAATATCAATGAACTTGTTGCCAATTCCAAATCAGCTATTGCTGATGTGGAGGTCAAGTTTTCAGGTCCAAATGTTCTCTTGAAAACTGTGTCTCCACGAATTCCAGGGCAGGCCACGAGAATCATATCAGCACTTGAAGACCTTGCGCTTGAAATCCTCCATGTCAACATGAGCACAGCTGATGAAACCATGTTAAACTCATTCACCATTAAGGTAAGGTACACTTGTGTGTGTGTGTGTTTTTTTTTTTTTTTTGCATGA 978 0.4274 MDDTLSDIFQDTNFGGDDLFAILESLEDFQDFPSPINNEAFVNTTPRENERNTTRMVSTTSSSAPQDSETEPETSSKSCKRQKLGPTSTEEPNGDGQQKISHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIEGVVDYINELQQVLQCLEAKKHRKVYNDVLSPRLVSSPRPSPLSPRKPPLSPRIMNLPISPRTPQPSSPYKPRLQQGYLSPTISNSVEPSPTTSSASSINDNINELVANSKSAIADVEVKFSGPNVLLKTVSPRIPGQATRIISALEDLALEILHVNMSTADETMLNSFTIKVRYTCVCVCFFFFFA. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02635 325 Pfam Helix-loop-helix DNA-binding domain 98 149 IPR011598 GO:0046983
Seca8g02635 325 PANTHER TRANSCRIPTION FACTOR FAMA 4 315 IPR044283 GO:0003700|GO:0010052
Seca8g02635 325 Gene3D - 89 163 IPR036638 GO:0046983
Seca8g02635 325 FunFam Transcription factor SPEECHLESS 89 163 - -
Seca8g02635 325 CDD bHLH_AtFAMA_like 100 171 - -
Seca8g02635 325 MobiDBLite consensus disorder prediction 79 100 - -
Seca8g02635 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 96 168 IPR036638 GO:0046983
Seca8g02635 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 97 148 IPR011598 GO:0046983
Seca8g02635 325 MobiDBLite consensus disorder prediction 176 193 - -
Seca8g02635 325 MobiDBLite consensus disorder prediction 170 213 - -
Seca8g02635 325 SMART finulus 103 154 IPR011598 GO:0046983
Seca8g02635 325 MobiDBLite consensus disorder prediction 36 72 - -
Seca8g02635 325 MobiDBLite consensus disorder prediction 32 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02635 Seca-Chr8 60721906 60723491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02635 9 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 53.959 3.20e-93 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g02635 HLH 3.2e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02635 K20558 - gmx:100777437 416.001