Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02604 ATGGAACAGCGCAGATGTAAATACACTGTGCATCAGTGTGTCACCAAGAAGTTCATGAAAGTAAAGCACAACAATAACAGTTCCATTCCCACTGAGCCAAGAGTTGTTCGCATATCTGTCACTGATCCCGATGCAACCGACTCTTCCAGCGACGAGGAAGGAGGAGAGTGCTTCCCTCGCCGGAGAATGAAGTGCTATGTCAACCAGATTGACATCCAACCGGCCTGCAAGACTGTCTCCACAACGGCCAAAAAGAGGCCCGCCGGAGACACCGCTTCCTGCCGGCGACCGGTGAAGGTCTCTGCTGACGGAAATGTGAGGAAGTTCCGTGGCGTGCGGCAGAGACCGTGGGGAAAATGGGCGGCGGAGATTCGAGATCCGGTGAGCCGCGACCGCCTCTGGCTCGGCACATTTAACACCGCAGAGGAAGCTGCTATGGTCTATGACGCCGCGGCGATCAGGCTCCGCGGTCCCGACGCTCAGACGAACTTCCTCACGCCGCCGGCGAGGGAAGAGAAGTCGGAGGAACAGGAAGAACCAGAAGTCGTTGCCGGAAAGCCAGAAATCAACGTGGATGTCAAGCCGGTGGCGTCCGGCTCCGGTTATGATTCCGGTGAGGAGTGTCTCAACCTCTCATCTCCCACTTCGGTTCTCCAGTTCAGAAGAGAGGAAATCTGTGAACCGCATAAACCGGTCGAACCGGTTGAACCAAAAGTTATGTGTGGGAAGGTGGATGCTGAACCGGTTATGGCTGTGGAAGAGGTGTTTGGAGAGTGTCAAGGTGAAACGAGGCTATTCACTGAAGAGTTTTTCAGTAATGACACGCCGGTGTGGGATGATGTGTTCAATTTTTCAACTACCCAAAACTACTCTGTTATGTTTGATGCCCCAGTTTCCAATTTGTTCCATGAAACGACGCCGGTTTTCGTAAGTGAGGGTGGTTTCAGTGATCATCACATAGATTTTGATAAAACGTTCTCACCATCAACGTTATGCCAAGTGGAAGATTACTTCCAAGACATTTTGTTAGGTTCTGATCCTTTGGTGGTGCTCTGA 1056 0.5189 MEQRRCKYTVHQCVTKKFMKVKHNNNSSIPTEPRVVRISVTDPDATDSSSDEEGGECFPRRRMKCYVNQIDIQPACKTVSTTAKKRPAGDTASCRRPVKVSADGNVRKFRGVRQRPWGKWAAEIRDPVSRDRLWLGTFNTAEEAAMVYDAAAIRLRGPDAQTNFLTPPAREEKSEEQEEPEVVAGKPEINVDVKPVASGSGYDSGEECLNLSSPTSVLQFRREEICEPHKPVEPVEPKVMCGKVDAEPVMAVEEVFGECQGETRLFTEEFFSNDTPVWDDVFNFSTTQNYSVMFDAPVSNLFHETTPVFVSEGGFSDHHIDFDKTFSPSTLCQVEDYFQDILLGSDPLVVL. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02604 351 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 32 231 - -
Seca8g02604 351 ProSiteProfiles AP2/ERF domain profile. 108 165 IPR001471 GO:0003700|GO:0006355
Seca8g02604 351 Gene3D AP2/ERF domain 107 166 IPR036955 GO:0003700|GO:0006355
Seca8g02604 351 FunFam Ethylene-responsive transcription factor 2 107 166 - -
Seca8g02604 351 CDD AP2 108 164 IPR001471 GO:0003700|GO:0006355
Seca8g02604 351 SMART rav1_2 108 171 IPR001471 GO:0003700|GO:0006355
Seca8g02604 351 Pfam AP2 domain 108 157 IPR001471 GO:0003700|GO:0006355
Seca8g02604 351 PRINTS Ethylene responsive element binding protein signature 109 120 IPR001471 GO:0003700|GO:0006355
Seca8g02604 351 PRINTS Ethylene responsive element binding protein signature 131 147 IPR001471 GO:0003700|GO:0006355
Seca8g02604 351 SUPERFAMILY DNA-binding domain 108 165 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02604 Seca-Chr8 60001104 60002159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02604 1 350 AP2-EREBP Transcription Factor Family AT4G27950 38.017 3.69e-56 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g02604 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02604 - - pcin:129303306 328.176