Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02600 ATGGCTTTGAGCTTAGATAGCATTTACTATAGTCACAATGCAGAACCTCAAAGCAACAGAGAACACCATTCTTCTCTTGACCTTCTTTCTGATCCCTTTAGGCAAGTTCAATCCCATCCATACTATTCAGGACCTGCTTGCCATGGGATTTATCAAACACCATTGGTGGAAGAAACCAAGGAACCCCATGTCACAGTTTGCAGCTCACAAATGGCTCAAGTGGCAGCAGAGGAAGGCATTGCTTACTTCAAAAACTGGGTGGCCCCAAGAGAGTATTCTACTACTCAGCAGACTCTGGACCAACAACAAGTGAATAGTAGCATTGGAGAGGATCATGGTGGTTCTTGTTCTGTTGGGGTTGGTGAGTTACAGTCACTGAGCCTCTCCATGAGTCTTGGTTCTCAATCTAGCTGTGTCACGGTTCCAAGTCAGATCTCATCTTTTGGGACTGACTCAGTGGCTACCATGACAGCAAAGAAGAGAGAGGCTCCTAAGCTTGGCCAGAAGCAACCTGTGCATAGGAAATCCATTGACACATTTGGGCAAAGAACTTCACAGTATAGAGGAGTGACAAGGCATAGATGGACTGGTAGATATGAAGCCCATTTATGGGATAACAGTTGCAAGAAGGAAGGACAAACCAGGAAAGGAAGACAAGGTGGTTATGATATGGAAGAGAAAGCTGCAAGAGCTTATGATCTTGCAGCTCTTAAGACTAATGTTGTCTTAGCTGAGCCTGAAAACAAGCCTCCTTCAGAAACTGCCACTGTTGCCTCAGTTGAGCCTGATAACAAGCCTTCAGAAACTGCCATTGTTGCCTCAGCTGAGCCTGATAACAAGCCTTCAGATACCCCAGCTGAGACTGATAACAAGCCTTCAGAAACTGCAACTGTTGCTTAA 900 0.4533 MALSLDSIYYSHNAEPQSNREHHSSLDLLSDPFRQVQSHPYYSGPACHGIYQTPLVEETKEPHVTVCSSQMAQVAAEEGIAYFKNWVAPREYSTTQQTLDQQQVNSSIGEDHGGSCSVGVGELQSLSLSMSLGSQSSCVTVPSQISSFGTDSVATMTAKKREAPKLGQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQGGYDMEEKAARAYDLAALKTNVVLAEPENKPPSETATVASVEPDNKPSETAIVASAEPDNKPSDTPAETDNKPSETATVA. 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02600 299 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 143 239 - -
Seca8g02600 299 CDD AP2 185 238 IPR001471 GO:0003700|GO:0006355
Seca8g02600 299 ProSiteProfiles AP2/ERF domain profile. 186 250 IPR001471 GO:0003700|GO:0006355
Seca8g02600 299 Pfam AP2 domain 186 238 IPR001471 GO:0003700|GO:0006355
Seca8g02600 299 SMART rav1_2 186 252 IPR001471 GO:0003700|GO:0006355
Seca8g02600 299 SUPERFAMILY DNA-binding domain 185 238 IPR016177 GO:0003677
Seca8g02600 299 MobiDBLite consensus disorder prediction 244 299 - -
Seca8g02600 299 Gene3D AP2/ERF domain 185 245 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02600 Seca-Chr8 59731276 59732713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02600 90 238 AP2-EREBP Transcription Factor Family AT4G37750 57.065 1.09e-51 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca8g02600 AP2 2.4e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02600 K09285 - gmx:100798179 320.857