Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02595 ATGGGCAAGAAGCTGGGACTCTTGTTCATTTACTCAGTAGCCTTCATGATTGGAGCAATATTATTTGGTGTTAGAGCTGAACCAGTGGAGGATAAAGAAGCATTGCTTGATTTCCTTCACAGCATTGATCACTCTCATCATGTCAACTGGGATAAGAGATCTTCTGTATGCAAAAGCTGGATAGGAGTGACCTGCAACACAGAACATTCCCAAGTTATAGCCCTTCAGCTACCCAGAGCTGGATTGAGTGGTCCAATCCCACCAAACACTCTTAGTCGCCTCTCAGCATTGCAAATTGTGAGTCTTCCATCAAATAGTATAACTGGTTCTTTCCCTCTTGGTTTCTCTGAGTTAAAGAATTTGACCTATCTCTACCTCCAATTTAACAACTTTTCTGGTCCATTACCATCAGATTTTTCAGTTTGGAATAATCTTGCTGTTGTCAATTTATCCAACAATTCTTTTAATGGGAGCATCCCTTTATCAGTTTCAAATTTGACTCATCTCACTTCTTTAGTCCTAGCCAACAACTCTCTTTCAGGTGAAATTCCTGATCTCAATATTCCTAGCCTGCAAGAGCTAAATTTGGCCAACAATAACCTTAGTGGAGTTGTGCCTAAATCCCTTCAGAGATTCCCAAATTGGGCCTTTTCAGGTAACAATCTTACATCTTCACATGCACTTCCTCCTGCTTTTCTTGCCCCAAGTACTCATCCAAGAAAGAAAACCAAAGGACTTAGCGAACCAGCATTGTTGGGTATCATCATTGGAGGTTGTGTGTTGGGACTTATAGTGATAGCATCTTTGGTGATTGTGTGCTGCTATGACAAACGTGGGGAAGATGGACAATCAGTGAAGTCCATGAAAAAAGAAGACTTCTCTGAGAAGAAAGAAAGTTCTGAAAGTCAAGATAATAACAAAATTGTCTTCTTTGAGGGTTGCAATCTTGCATTTGACTTGGAGGACCTGTTGAGAGCATCTGCTGAGGTTCTTGGAAAGGGCACATTTGGTACTGTATATAAAGCTGCTCTAGAGGATGCAACAACAGTGGCAGTGAAGAGGTTGAAGGAGGTCACAGTTGGAAAACGCGAGTTTGAACAGCAGATGGAGATGGTGGGGACTATTAGGCATGAAAATGTGGCTGCACTAAGGGCATACTACTATTCAAAAGAGGAAAAACTTATGGTATACGATTACTACGAACAGGGCAGTGTCTCAGCAATGTTGCATGGCAAAAGAGGGGTAGGCAGGATTTCTTTAGACTGGGAAAGCCGTTTGAGAATAGCAATTGGTGCAGCAAGAGGCATTGCTCACATCCATGGAGGGAAACTCATCCATGGAAACATAAAATCCTCAAACATCTTCCTCAACTCCCAAGGATATGGTTGTCTATCTGATATTGGATTGGCAACATTGATGAGTCCAATGTCCCCACCAGCATTGAGAACTGCAGGATACCGTGCAGTGGAAGTAACAGACCCACGAAAGGCAACAACAGCATCCGATGTGTACAGTTTTGGGGTCCTGTTACTTGAGCTTCTAACTGGGAAATCTCCAATACATGCCACAGGAGGTGAAGAGGTTGTTCACTTAGTTAGATGGGTGAATTCTGTGGTCAGAGAGGAATGGACTGCAGAGGTGTTTGATGTAGAGTTACTGAGACATCCAAATATAGAGGAAGAAATGGTTGAGATGCTACAAATAGGGATGGCATGTGTTGTAAGAATACCAGAACAGAGGCCAAAAATGGAAGAGGTTGTGAGAATGGTGGAGGAAATTGGTCGAGTGAATACTGGTAATCGACCTTCCACAGAGTCTAGATCAGGAGGTTCTACTCCAACACCTCGTGCAATTGAGACACCTTCGTATTCTACTTCTCTTCCACTTTGA 1890 0.4265 MGKKLGLLFIYSVAFMIGAILFGVRAEPVEDKEALLDFLHSIDHSHHVNWDKRSSVCKSWIGVTCNTEHSQVIALQLPRAGLSGPIPPNTLSRLSALQIVSLPSNSITGSFPLGFSELKNLTYLYLQFNNFSGPLPSDFSVWNNLAVVNLSNNSFNGSIPLSVSNLTHLTSLVLANNSLSGEIPDLNIPSLQELNLANNNLSGVVPKSLQRFPNWAFSGNNLTSSHALPPAFLAPSTHPRKKTKGLSEPALLGIIIGGCVLGLIVIASLVIVCCYDKRGEDGQSVKSMKKEDFSEKKESSESQDNNKIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAALEDATTVAVKRLKEVTVGKREFEQQMEMVGTIRHENVAALRAYYYSKEEKLMVYDYYEQGSVSAMLHGKRGVGRISLDWESRLRIAIGAARGIAHIHGGKLIHGNIKSSNIFLNSQGYGCLSDIGLATLMSPMSPPALRTAGYRAVEVTDPRKATTASDVYSFGVLLLELLTGKSPIHATGGEEVVHLVRWVNSVVREEWTAEVFDVELLRHPNIEEEMVEMLQIGMACVVRIPEQRPKMEEVVRMVEEIGRVNTGNRPSTESRSGGSTPTPRAIETPSYSTSLPL. 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02595 629 MobiDBLite consensus disorder prediction 594 629 - -
Seca8g02595 629 Pfam Leucine Rich Repeat 190 211 IPR001611 GO:0005515
Seca8g02595 629 Pfam Protein tyrosine and serine/threonine kinase 329 588 IPR001245 GO:0004672|GO:0006468
Seca8g02595 629 Gene3D Ribonuclease Inhibitor 29 239 IPR032675 -
Seca8g02595 629 FunFam pollen receptor-like kinase 1 294 399 - -
Seca8g02595 629 Gene3D Transferase(Phosphotransferase) domain 1 400 607 - -
Seca8g02595 629 FunFam Probable inactive receptor kinase RLK902 28 187 - -
Seca8g02595 629 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 400 604 - -
Seca8g02595 629 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Seca8g02595 629 Gene3D Phosphorylase Kinase; domain 1 290 399 - -
Seca8g02595 629 MobiDBLite consensus disorder prediction 597 629 - -
Seca8g02595 629 SUPERFAMILY Protein kinase-like (PK-like) 329 591 IPR011009 -
Seca8g02595 629 ProSiteProfiles Protein kinase domain profile. 325 593 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02595 629 PANTHER OS05G0588300 PROTEIN 12 602 - -
Seca8g02595 629 SUPERFAMILY L domain-like 36 225 - -
Seca8g02595 629 ProSitePatterns Protein kinases ATP-binding region signature. 331 362 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02595 Seca-Chr8 59664920 59668947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02595 20 618 Receptor kinase-like Gene Family AT4G23740 57.488 0.0 696
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Seca8g02595 PK_Tyr_Ser-Thr 7.1e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02595 - - aprc:113851984 951.044