Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02583 ATGTCATCAGTGAACAACAAATATAGTCGGTTGATACAAAAGAATGATGTGATCAAAATTGTTCCGGGTGCAACAGTAGCATCAGATGGTTTTGTTATCTGGGGACAAAGTCACATAAATGAAAGCACGATAACTGGTGAGGCAAGGCATGTGGCGAAGAGGAAGGGTGATATGGTGATTGGAGGCACTGTGAATGAGAATGGGATTTTGCATGTTAAGGTAACAAGGGTTGGATCAGAGAGTGCCCTTTCCCAGATTGTTCGACTTGTTGAGTCTGCCCAAATGGCTAAAGCTCCTGTCCAGAAACTTGCAGACCAAATTTCTAAATATTTTGTTCCACTAGTAAGCCTAACACTAAACTACTTTTTCTGA 372 0.414 MSSVNNKYSRLIQKNDVIKIVPGATVASDGFVIWGQSHINESTITGEARHVAKRKGDMVIGGTVNENGILHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADQISKYFVPLVSLTLNYFF. 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02583 123 SUPERFAMILY Calcium ATPase, transduction domain A 10 90 IPR008250 -
Seca8g02583 123 Gene3D - 3 94 - -
Seca8g02583 123 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 9 117 - -
Seca8g02583 123 FunFam Copper-transporting ATPase 1, putative 3 94 - -
Seca8g02583 123 Pfam E1-E2 ATPase 9 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02583 Seca-Chr8 59108270 59108641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02583 10 115 Primary Pumps ATPases AT1G63440 88.679 5.70e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02583 K17686 - nnu:104596090 190.66