Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02563 ATGCCATCTTGGTGGACAAGAAAGTCTAAAGTAGTTGCACAAGAAGATAACTATATACAACAAGAAGAAAAGCAGAAGTGCAGGAACAAAGATTGTAAAAGCAATGCTTCAAAAACCAGTGCTAGAACAAACAAGAGGAAGCAAAATATAGAGAAAGCAAAAAGCTTTGAAGAATCTGTCTTAGTTTCTTACAGATTTTCTAAAGCAAGTTTTAAAGCTTCTCCCATTCCAGGTAATGGACCTTTCCATTCAGAGAAGCAAGTATATCCTCTGCCTAGGCCATCAAGGTCACTGGATCTTCAATCAGTGAAATTTGATCAGAAGGGTGTGGTGTTTTCTTCAGAACCAACATCAAGTTCAAGCTCTCCTTCATCACGGTCTTCTACTTCAACTTCTTTGGGTGGAGATCATAGAGATTCTTCTGGCTTTTCCATAGAATTTGAAGAAACTGAATGTGACTCTGGCTTGAGAATTCAACATCAAAGATCAGAACTAGCCTCCAAAACAGAAAAGTTTCCACAACTTTGGCAAACTAGTAATGAGCACCAAACCATAAATGATGGAAATTGGAGGCATTTATGTCATCCTCTGCCTCTTCCTCCTAATTATTCTAATGGATTATCACAGCATCTTCAATCAAAATGGATCAAGGGAAGGCTTCTGGGAAGAGGGTCATTTGGCCATGTCTATGCTGGACTCAATAGCACAAATGGCCAGCTGTGTGCAATTAAGGAAATAAGATCTATCTGTGAGGATCAGAACTCTGAAGGTTATCTCAAAGAGATAAATCAGGAGGTAGCAGTACTAAGTCAGCTTTCACATCCCAACATTGTCCAATACTATGGAAGTGAACTGGGGAAAGGCAAGCTCTCTCTATATCTAGAGTATGTCTCAGGTGGATCAATTCACAAATTGCTTCAGGATTATGGCCCTTTCAAGGAACCTCTTATTAGAAGTTACACAAGGCAGATTCTTCATGCGCTGGCTTACTTGCATGCAAGAAATATTGTGCACAGGGATATCAAGGGAACAAACATACTAGTAGATCCTAATGGAAAAATCAAGCTTGCTGATTTTGGCTTGGCTAAACATATAACATCATGTGCCAGTGTTCTTTCTTTCAAAGGAAGCCCTCGCTGGATGGCACCTGAGGTAATTTTGAATACTAGTTGTGTCGGCCTTCATGTGGATATATGGAGCTTGGGATGTACAATTATTGAAATGGCCACATCAAAGCCACCATGGAGCCAATATGAAGGGGTAGCGGCAATATTTAAAATTGCAAACAGCAGAGATTATCCTCAAATTCCTTCACAGCTTTCAGAGGATGCACAAGCCTTTTTGAAACTTTGTTTGCAGAGAGACCCTCTTTTACGTCCTTCAGCTTCACAACTGCTGCATCACCCTTTTATCCATGAAGATAGTTGTTAG 1431 0.4011 MPSWWTRKSKVVAQEDNYIQQEEKQKCRNKDCKSNASKTSARTNKRKQNIEKAKSFEESVLVSYRFSKASFKASPIPGNGPFHSEKQVYPLPRPSRSLDLQSVKFDQKGVVFSSEPTSSSSSPSSRSSTSTSLGGDHRDSSGFSIEFEETECDSGLRIQHQRSELASKTEKFPQLWQTSNEHQTINDGNWRHLCHPLPLPPNYSNGLSQHLQSKWIKGRLLGRGSFGHVYAGLNSTNGQLCAIKEIRSICEDQNSEGYLKEINQEVAVLSQLSHPNIVQYYGSELGKGKLSLYLEYVSGGSIHKLLQDYGPFKEPLIRSYTRQILHALAYLHARNIVHRDIKGTNILVDPNGKIKLADFGLAKHITSCASVLSFKGSPRWMAPEVILNTSCVGLHVDIWSLGCTIIEMATSKPPWSQYEGVAAIFKIANSRDYPQIPSQLSEDAQAFLKLCLQRDPLLRPSASQLLHHPFIHEDSC. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02563 476 Pfam Protein kinase domain 217 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02563 476 ProSiteProfiles Protein kinase domain profile. 215 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02563 476 MobiDBLite consensus disorder prediction 19 52 - -
Seca8g02563 476 MobiDBLite consensus disorder prediction 111 140 - -
Seca8g02563 476 ProSitePatterns Protein kinases ATP-binding region signature. 221 244 IPR017441 GO:0005524
Seca8g02563 476 MobiDBLite consensus disorder prediction 19 35 - -
Seca8g02563 476 Gene3D Transferase(Phosphotransferase) domain 1 212 476 - -
Seca8g02563 476 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 28 473 - -
Seca8g02563 476 MobiDBLite consensus disorder prediction 111 138 - -
Seca8g02563 476 SMART serkin_6 215 471 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02563 476 ProSitePatterns Serine/Threonine protein kinases active-site signature. 336 348 IPR008271 GO:0004672|GO:0006468
Seca8g02563 476 SUPERFAMILY Protein kinase-like (PK-like) 192 473 IPR011009 -
Seca8g02563 476 MobiDBLite consensus disorder prediction 72 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02563 Seca-Chr8 57957126 57960744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02563 213 471 MAP Kinase Kinase Kinase AT1G53570 67.954 5.35e-132 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca8g02563 Pkinase 1.2e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02563 K04421 - mof:131161911 459.529