Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02562 ATGAATAAAATGCATGGAAGATTTGAAGTTCTTGCGCATTCTCTTTACGTGGAGGGGGATACCCAAGTGGAGCAATACAATGATTATGAGGATATGCCTGCACCAATGCCCAAAGAAACCCGTGAATCTGTGCTTGAGCTGAATGATAAACTTCAAAAGCAAACAATTTCATCTACGAGTAGACCTGCTGAGGGACAACAACCAAAGCAAAACAAGTGCAACACATGTAATGTTTCTTTTGAAGATGCTAAGCTTTACAGGGAACACCACAAGAGTGAGTGGCACAAGCACAATATGAAGCGAAAGACAAGGCAACTCCCACCACTTACGGAAGAAGAGTGCATGGCAGATATGGAATTGGGTGACTCAAACTCTGATTTGAAGGATTATTCATTTTGA 399 0.416 MNKMHGRFEVLAHSLYVEGDTQVEQYNDYEDMPAPMPKETRESVLELNDKLQKQTISSTSRPAEGQQPKQNKCNTCNVSFEDAKLYREHHKSEWHKHNMKRKTRQLPPLTEEECMADMELGDSNSDLKDYSF. 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02562 132 Gene3D Classic Zinc Finger 61 121 - -
Seca8g02562 132 MobiDBLite consensus disorder prediction 52 74 - -
Seca8g02562 132 SUPERFAMILY beta-beta-alpha zinc fingers 67 118 IPR036236 -
Seca8g02562 132 ProSitePatterns Zinc finger C2H2 type domain signature. 73 95 IPR013087 -
Seca8g02562 132 PANTHER ZINC FINGER PROTEIN 622 70 114 IPR040025 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02562 Seca-Chr8 57950293 57950691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02562 1 132 C2H2 Transcription Factor Family AT1G43860 46.528 1.54e-40 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g02562 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02562 K14574 - lja:Lj4g3v1983220.1 250.366