Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02561 ATGTCGAGGATGCTGGTGCAGCCCATAGGGCAGAAGAGGCTAACCAATGTGGCTGTTGTCCGTCTTAAAAAGCATGGCATGCGCTTTGAGATTGCCTGCTACCCAAACACTGTCCTTTCTTGGCGTTCTGGCGTGGAGAAGGACTTGGATGAAGTGTTGCAATCTCACACCGTTTATTCCAATGTTTCCAAAGGGGTTCTTGCCAAGTCAAAGGAACTGATTGCAGCTTTTGGCACCGATGACCACTCCAAGATATGCTTAGAGATTTTAAAGAAAGGGGAACTTCAGGTTGCTGGCAAAGAGAGGGAGTCGATGCTGGCGAGTCAGTTCAGGGACATTGCCACCATTGTGATGCACAAGACTTACAATCCCGAGACTCAGCGTCCTTACACCATCAGCATGATCGAACGCCTCATGAGGGAAATCCATTTTGCTGTTGATCCAAACAGCACCTCCAAGAAACAGGCTCTGGAGTTGATTCAGGAGCTTCAAAAGCACTTCCCTATAAAACGGTGTCCATTGAGAATACGAGCTGTTGCTCCTGAGGAGCAAGTGTCTGCCCTTTTAGAGAAGCTGAGTGAGTGGAAGGCAACCGTTGTTTCTAAAGAAGGATCTGCTGCTCAGATATCTGTTGTAAGTCCTTGTTTTTCCTCCTATAGTTGTAAACAACTTTTAATTCATGGTTCCATTCCATTTTCAGTTTAG 705 0.4638 MSRMLVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDLDEVLQSHTVYSNVSKGVLAKSKELIAAFGTDDHSKICLEILKKGELQVAGKERESMLASQFRDIATIVMHKTYNPETQRPYTISMIERLMREIHFAVDPNSTSKKQALELIQELQKHFPIKRCPLRIRAVAPEEQVSALLEKLSEWKATVVSKEGSAAQISVVSPCFSSYSCKQLLIHGSIPFSV. 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02561 234 FunFam SBDS, ribosome maturation factor 3 96 - -
Seca8g02561 234 NCBIfam ribosome assembly factor SBDS 13 198 IPR002140 GO:0042256
Seca8g02561 234 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Seca8g02561 234 Gene3D - 100 172 IPR037188 -
Seca8g02561 234 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Seca8g02561 234 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Seca8g02561 234 Gene3D - 2 96 IPR036786 -
Seca8g02561 234 FunFam SBDS, ribosome maturation factor 100 172 - -
Seca8g02561 234 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 213 IPR039100 -
Seca8g02561 234 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Seca8g02561 234 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02561 Seca-Chr8 57948412 57949635 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02561 27 212 C2H2 Transcription Factor Family AT1G43860 68.817 3.77e-89 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02561 K14574 - gmx:100797497 385.571