Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02556 ATGTCATTGGTTATATCTCAAGAGCTGTCTGATACATCATATAGGAATGCCAAGCTTTACTCTCTGAAGGGAACTGATGTTACACCTGGCTTATCCTCTCGTAATTTTGCTCCTGATAAGAACAGAAGCATGTACATGACAGATTCTTACTCCAGTGAGAGTTATGAAAAATACTTCCTTGATTCACCTTCAGAAGAGCTGATAGAACCATCTAGTTCCAGCATATCAGGAAATTCAGTTCCTGATGGTGCTTCATCATACCAGCTCAGAGCTAGTTCAGGAGCTTCTATGGTCACTGACAACCCTTTTGATACTTCTTTCTTGTCTACAAGGCATCATGATGCCTATCAAACCAAGTTTGGATCAGACTTGTTGGAAAATGAGAGTGTGCATTGCCTTGACTTTGATGGTGAAATGCGATTAAAAATACAAGAATTGGAGAGGGCATTGCTTGGTGATAATAATGATGAGGAGGAGGAGGAAGAAGAATACATATTTGAGACTGTGCAAAGCATGGAGATTGATCCTGACATTGCTGAGTGGACCAATCCCATTGAGAACATGCTACTCCATGACTCACCAAAGGAATCTTCATCCTCAGATTCCAATCTTAGCAGCATCAGTAGCACCAAAGAAGTATCACAAAAAACTCCTCGAACCCCCAAGCAATTGCTTTATGAATGTGCTAATGCAATTTCAGAAGGAAATGAAGTAAAAGCCTCATCAATGATAAATGATCTCCGGCAGATGGTCTCAATTCAGGGAGATCCTTCCCAAAGAATTGCAGCCTATATGGTGGAAGGACTTGCAGCTCGTATGGCTTCATCTGGAAAATGTATTTACAATGCTTTGAAATGCAAGGAACCTCCTTCTTCAGATCGTCTAGCAGCCATGCAGATACTATTTGAGGTTTGCCCTTGTTTTAAATTTGGATTTATTGCTGCGAATGGCGCAATTGCTGAGGCTGTGAAAGATGAAAAGAAGGTTCACATAATAGATTTTGACATCAATCAAGGAAGTCAATACATAACTCTAATACAAACACTTGCTTCGAGGCCAGGTAAGCCACCTTATGTGAGATTAACTGGGGTTGATGATCCTGAGTCTGTGCAGCGATCTGTTGGAGGCCTAAATAACATAGGACAGAGACTTGAAAAGCTGGCAGAAGCACTTGGATTGCCATTTGAGTTTCGAGCAGTGGCATCAAGGACTTCAATTGTCACTCCATCAATGCTCAACTGTCGTCCTGGTGAAGCACTTGTGGTGAACTTTGCATTCCAGCTTCATCACATGCGTGATGAAAGTGTATCAACGGTAAATGAACGAGACCAGCTTCTTCGCATGGTTAAGAGCTTGAATCCAAAACTTGTGACAGTTGTGGAGCAAGACATGAACACTAATACCTCCCCCTTTCTCCCGCGATTCGCTATAGCTTACGATTACTACTCTGCTGTGTTTGACTCACTTGATGCTACTCTTCCTAGAGAGAGCCAGGACAGGATGAATGTGGAAAGGCAATGCTTGGCAAGGGACATTGTCAATATTGTTGCCTGTGAGGGCGAGGATAGAATAGAACGGTATGAGGTTGCTGGAAAATGGAGGGCAAGGATGACAATGGCTGGCTTCACTTCATCCCCAATGAGCACAAATGTGAAAGAAGCTATTAGGCAACTCATTAAGCAGTACTGTGACAGGTACAAGATGAAGGAGGAAATGGGGACACTGCATTTTGGATGGGAAGACAAAAACTTGATTGTTGCTTCAGCATGGAAGTGA 1776 0.4257 MSLVISQELSDTSYRNAKLYSLKGTDVTPGLSSRNFAPDKNRSMYMTDSYSSESYEKYFLDSPSEELIEPSSSSISGNSVPDGASSYQLRASSGASMVTDNPFDTSFLSTRHHDAYQTKFGSDLLENESVHCLDFDGEMRLKIQELERALLGDNNDEEEEEEEYIFETVQSMEIDPDIAEWTNPIENMLLHDSPKESSSSDSNLSSISSTKEVSQKTPRTPKQLLYECANAISEGNEVKASSMINDLRQMVSIQGDPSQRIAAYMVEGLAARMASSGKCIYNALKCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAIAEAVKDEKKVHIIDFDINQGSQYITLIQTLASRPGKPPYVRLTGVDDPESVQRSVGGLNNIGQRLEKLAEALGLPFEFRAVASRTSIVTPSMLNCRPGEALVVNFAFQLHHMRDESVSTVNERDQLLRMVKSLNPKLVTVVEQDMNTNTSPFLPRFAIAYDYYSAVFDSLDATLPRESQDRMNVERQCLARDIVNIVACEGEDRIERYEVAGKWRARMTMAGFTSSPMSTNVKEAIRQLIKQYCDRYKMKEEMGTLHFGWEDKNLIVASAWK. 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02556 591 Pfam GRAS domain family 222 591 IPR005202 -
Seca8g02556 591 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 198 586 IPR005202 -
Seca8g02556 591 MobiDBLite consensus disorder prediction 192 219 - -
Seca8g02556 591 Coils Coil 141 163 - -
Seca8g02556 591 ProSiteProfiles GRAS family profile. 212 591 IPR005202 -
Seca8g02556 591 MobiDBLite consensus disorder prediction 190 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02556 Seca-Chr8 57871729 57876278 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02556 1 591 GRAS Transcription Factor Family AT1G21450 63.894 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Seca8g02556 GRAS 1.9e-137 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02556 - - lja:Lj0g3v0277879.2 949.888