Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02553 ATGGAGGATTCTTCAGCTGGTGAGGACAGCAAGACTTGTCCACGTGGTCACTGGAGGCCTGCTGAGGATGAAAAGCTTCGCCAACTTGTTGAACAATATGGTGCCCAAAACTGGAATTCAATTGCTGAGAAGCTCCAAGGAAGATCAGGGAAAAGTTGCAGATTAAGGTGGTTCAATCAGCTTGATCCAAGAATCAACAGAAGGCCATTCACAGAAGAAGAAGAAGAGAGACTACTTGCAGCTCACCGCATTCATGGCAACAAATGGGCACTCATAGCGAGGCTCTTCCCTGGTCGAACTGATAATGCTGTCAAGAATCACTGGCATGTTATAATGGCAAGAAAGCAAAGGGAGCAATCCAAGAAGAGAAGCTTTCATGACCTCTATTCCAACAACACTACTTCCTCTTCTTCTAATAATAATAACAATATTATTATTAGTTTTCCCCATAAACCTCCTCATGAACTCTTATTTAGCTCATCATCAAGAATTGGGTTAGAGAATGCAAGATTCTTTGACTTCAGGAGCCTCTATAATAAAGAAAGGACAACAACAACAACAATTGGAGCAAATTCTCCTATGTCCAATAATAATGTTTACCTTTCAGAAAGCTCTAAAGCCTCAGATAGGTTTCTTCACAGAATTTATCCAAACCCTTCAATATCCTTCGGAGGCTTTCGAGGTTCCAACATGTTCTCGACTCCGAACTATAGTAGTGTTGTTGTTCCTAGCAATTTTGGATGCCTTGATTATGCTAATGATGGAAGGATGAAAAGGGAGTTGGTGAGTTTCTGTGACAACTCATCCACATTGACCAAGTTGGGAGGTTCTAATTCTACTGAACAAGAGCAAACAGATGAGTCGTCCAATGATATTGAAGTTCCTTTCATTGATTTTCTTGGTGTTGGTGTCTCTTCATCATGA 924 0.4091 MEDSSAGEDSKTCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVIMARKQREQSKKRSFHDLYSNNTTSSSSNNNNNIIISFPHKPPHELLFSSSSRIGLENARFFDFRSLYNKERTTTTTIGANSPMSNNNVYLSESSKASDRFLHRIYPNPSISFGGFRGSNMFSTPNYSSVVVPSNFGCLDYANDGRMKRELVSFCDNSSTLTKLGGSNSTEQEQTDESSNDIEVPFIDFLGVGVSSS. 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02553 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 61 IPR017930 -
Seca8g02553 307 MobiDBLite consensus disorder prediction 119 141 - -
Seca8g02553 307 CDD SANT 18 59 IPR001005 -
Seca8g02553 307 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca8g02553 307 SMART sant 14 63 IPR001005 -
Seca8g02553 307 SMART sant 66 114 IPR001005 -
Seca8g02553 307 FunFam MYB transcription factor 68 142 - -
Seca8g02553 307 Gene3D - 15 66 - -
Seca8g02553 307 ProSiteProfiles Myb-like domain profile. 15 61 IPR001005 -
Seca8g02553 307 PANTHER MYB PROTEIN-RELATED 15 143 - -
Seca8g02553 307 Gene3D - 69 130 - -
Seca8g02553 307 SUPERFAMILY Homeodomain-like 14 108 IPR009057 -
Seca8g02553 307 MobiDBLite consensus disorder prediction 1 21 - -
Seca8g02553 307 MobiDBLite consensus disorder prediction 126 141 - -
Seca8g02553 307 FunFam MYB transcription factor 15 66 - -
Seca8g02553 307 Pfam Myb-like DNA-binding domain 18 78 - -
Seca8g02553 307 CDD SANT 78 109 IPR001005 -
Seca8g02553 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02553 Seca-Chr8 57644739 57646648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02553 13 307 MYB Transcription Factor Family AT1G17950 43.624 1.14e-68 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g02553 Myb_DNA-bind_6 2.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02553 K09422 - gmx:100817328 355.14