Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02539 ATGCAGCTAGGTGACTTCGGCCTTGCCAAATGGAAGACTGGTGATAATACTCTACAAACAAGGATAATGGGCACATTAGGATATCTTGCTCCTGAGTACGCAGAAGATGGTATTGTTTCTGTTCGGCTAGATGTGTATGCCTATGGCATCGTTCTGTTACAATTGATATCAGGACGTAAGGCCAATTCCAGTCCAGAGGAACATCTCTCTCTTCGGCAATGGGCTGAGCCAAAGATTGAGAAGTTAGCTTTTCATGAACTCATTGACTCTCGTCTTGGAGAGTCATATAACTCAAATGATCTATACCTCATGGCGAAAGTAGCATACTACTGCGTGCAAAGAAATCATGAGAAGCGCCCAACAATGGGAGAGTCTAGTTATCCAAGGGATGGGAGACTAACCTTTGAGAAATTAGATAGGGTACTTGTGAACTGGTCGTGGAGGATTCAGTTTGAATATGCTATGGCAACTGCTATCCCCGTGTCTTCAGACCACACCCCTATAATTCTATGGCATGATCCTAAAATCAGAAGTGGATCCTATTTTAGATTTGAGGCGTTTTGTGACAAGACTATTAAAGAAGGGTGGAAAACTGATGCAGAAACTGACGGTCCCCAGGATACTTTCTTAAGGAAAACAAGACACTGTTAA 651 0.4286 MQLGDFGLAKWKTGDNTLQTRIMGTLGYLAPEYAEDGIVSVRLDVYAYGIVLLQLISGRKANSSPEEHLSLRQWAEPKIEKLAFHELIDSRLGESYNSNDLYLMAKVAYYCVQRNHEKRPTMGESSYPRDGRLTFEKLDRVLVNWSWRIQFEYAMATAIPVSSDHTPIILWHDPKIRSGSYFRFEAFCDKTIKEGWKTDAETDGPQDTFLRKTRHC. 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02539 216 SUPERFAMILY Protein kinase-like (PK-like) 3 125 IPR011009 -
Seca8g02539 216 PANTHER OS01G0253100 PROTEIN 2 124 - -
Seca8g02539 216 Gene3D Transferase(Phosphotransferase) domain 1 1 129 - -
Seca8g02539 216 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02539 216 Pfam Protein kinase domain 2 123 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02539 Seca-Chr8 56793867 56797926 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02539 3 124 Trihelix Transcription Factor Family AT5G38560 42.748 5.93e-27 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca8g02539 Pkinase 9.8e-11 CL0016