Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02538 ATGGAGAACCCTGCTCCCCCTTCTTATGTCATAATTGCGTGTGATACGACGAAAGATCGCAATGAGAATGAGATCAAGCTTGTTGTTGATCACCTTCGAAGCAAGGGTGGCATTCTTTCTGCAGGGGACAACTTGCTTGTGCTCGGTGTCTTGCATAAGGTGCCTCACCCAATGGGATACCAGACATTACCATGCCCGGAGTCCTTTTCTGGCACGAACATTCGTGCAATGGAGGAAGTAGTTAACAAGAAAGTTGATGCATATATAAGTGTACTTCTGCCAAGTTATGAAGAATGTGAAAATAAAGGGGTTAGCATCCAAGTTAAAGTCACTGCAGGTTTTCCAATTAGACAGGTTATTGTACAAGAGGTTACAAACTACAATGCATCTTGGGTTATTCTTGATAGGCATCTTCGGCGTGACCTGAGATTCTACAAGAACAAGATATCATGTAGGGTTGCGTTGGTTAAAGATGACTTATCGGTGGATATTTGGAGATCTCATCATATAAATGAAACAGATATCACAGGACAAAAGCTTATCTATTCTTTGTCAAAGTGTGTTTCACTATCAGATTGTCATAGTAATGAAGATGTGGAGCAATCTGTTACCTTTTGCAAAAGTTGTCCCTTTTCCATAACTTCTTCTGACAGCTCCAGTTTGTTTAAGAGCAGCACAAAACATTCTAATGCTAACAGGAAAGAGGTGCTTAGTTCTTCAACAGATTTTGGGTCTTCTTCAGGCATAAGCAGCAAAGCAGAATATAAGCATCCCATTACTTCTCATATTTTCCAAAGTCAAAACAAATATGGCTTTCTATCAAATTCTTCAGATGCTCCAATTCTTTGTGCTGGTTGTGGGACAAGGACTGAATTATATACGAAGGAGTTAACGAGGTTCAGTTATTCTGATATACAGCTTGCAACAAATGATTTTTCAAAGGATAACTTATTAGGTGAAGGTGGATATGGTCACGTCTATAAGGGCACGCTTAAAGATGGACAACAAATAGCTGCCAAGGTAAGGAAAGAAGAAAGCACACAAGGATTCTCTGAATTCCATTCTGAGGTTTACGTCTTGAGTTTTGCTCGACATAAGAATATAGTGATGCTTTTGGGCTACTATAGCAAAGAAAGGCTAAATATATTGGTATATGAATATATTTGCAATAAGTCTCTTGAGTGGCATTTATTCGATAAAAATGCAGAAGTTCTCCCGTGGCAACAAAGATATGCTATTGCTATTGGAACCGCAAAAGGATTGCGTTTTTTGCACGAGGAATGTCGTGGAGGTCCTATTATTCATCGAGACATGAGACCAAGCAATATATTACTCACGCATGATTTTGTTCCCATGGTAAAATATGCTTCATTCTCTTTCGGTAATTGA 1389 0.3909 MENPAPPSYVIIACDTTKDRNENEIKLVVDHLRSKGGILSAGDNLLVLGVLHKVPHPMGYQTLPCPESFSGTNIRAMEEVVNKKVDAYISVLLPSYEECENKGVSIQVKVTAGFPIRQVIVQEVTNYNASWVILDRHLRRDLRFYKNKISCRVALVKDDLSVDIWRSHHINETDITGQKLIYSLSKCVSLSDCHSNEDVEQSVTFCKSCPFSITSSDSSSLFKSSTKHSNANRKEVLSSSTDFGSSSGISSKAEYKHPITSHIFQSQNKYGFLSNSSDAPILCAGCGTRTELYTKELTRFSYSDIQLATNDFSKDNLLGEGGYGHVYKGTLKDGQQIAAKVRKEESTQGFSEFHSEVYVLSFARHKNIVMLLGYYSKERLNILVYEYICNKSLEWHLFDKNAEVLPWQQRYAIAIGTAKGLRFLHEECRGGPIIHRDMRPSNILLTHDFVPMVKYASFSFGN. 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02538 462 Pfam Protein tyrosine and serine/threonine kinase 315 449 IPR001245 GO:0004672|GO:0006468
Seca8g02538 462 ProSiteProfiles Protein kinase domain profile. 312 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02538 462 PANTHER OS01G0253100 PROTEIN 220 453 - -
Seca8g02538 462 ProSitePatterns Tyrosine protein kinases specific active-site signature. 433 445 IPR008266 GO:0004672|GO:0006468
Seca8g02538 462 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 284 387 - -
Seca8g02538 462 Gene3D Phosphorylase Kinase; domain 1 284 387 - -
Seca8g02538 462 Gene3D Transferase(Phosphotransferase) domain 1 389 460 - -
Seca8g02538 462 SUPERFAMILY Protein kinase-like (PK-like) 293 452 IPR011009 -
Seca8g02538 462 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02538 Seca-Chr8 56786371 56793784 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02538 230 449 Trihelix Transcription Factor Family AT1G23540 39.091 2.83e-40 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Seca8g02538 PK_Tyr_Ser-Thr 2.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02538 - - vun:114163670 654.055