Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02530 ATGGAACTGAAGGTAAAGCATACGCAACTGTGTCAGTTGTTGATGGTTGCAGTAACTGTGCTAGTAGCAGCTGCAGCTGATCAAACCTTTCCAACTGTATCAGCAGCATCCAAACAAGCCCTGCCTGGCTGCAAAAACACTTGTGGAGATGTCCAAGTTCCATATCCATTCGGCATAGGCAATTCATCTACAGATCAAAGATCCTGTTTCTTGCAGGATGTTTTTGAACTTACTTGTGATGATGATGGCTCCAAATTATATTGGAGTAATATACAAGTTCTGAACATAAGTCTCCAAGGCCAAATGGACCATTTCAAGCAAGGAAACAAGTTCATAACTGTTGGTTGCGACAGTTATGGCTATCTCACCAGCGTTTACAAGGAGGAAAGATATGCAACAGGATGCTTCACAAGATGTTATGGCAATAGAATAATCGATAACGGAATGTGTTCGGGTATAGGGTGTTGCCTGGTGGATATTCCTCCTAGAATGTGGAATATCACTATAGAAGCATTTGGCTTCCGCGAGTTTCCGAATGAATCTTTGGGAACCTGCAGCTATTCCTTTGTTGTCAAAACAGGAAACTATACTTTCTCTACCTCTCATTTAGGACGCTTACCTTACACAGAATTCCCCTTGGTTATTGATTGGACAGTTTATGATAAGAAGGTCCTCGGATACACGAATTGTAGAATTGCTAAGGGTGGAGACGCCTATGCATGCAGTAAAAACAGCTATTGCTACGACGAGGACACAGGTTTGGGTTACCGATGCAGCTGCAATCCAGGATATGAAGGAAACCCGTACCATCCAGATGGATGCATAGACATCGACGAATGCAAGACAGCTAATCATACATGTATAGATGGAAATCATTGTCTCAACACCATTGGTAATTACACATGCGTTTGTCCACGTGGTCAATCCGGAAATGGAACACGGGAAGGAGGGTGCCACCAGCGTGATCTAACTATCATGGTTGTCATTGGAGCTGGAGCAGGATTTATTGTTGTATTTGTGGGGATTTCCTCCTTGTACTTAATGTACCAAAAAAGGAAACAAATCACACAAAAAGAGAAACTTTTTAAGGAGAATGGTGGTTTAATTATGCTTCAGAAACTCCGTACAAGAGAAGATTCCTCCCAACCTACTCGAATTTTCAGAGAAGATGAACTAAAGATGGCCACCAACAACTATGATGAAAGCTTAATCATTGGCAAAGGAGGTTATGGAACTGTTTACAAAGGGTTTTTACCAGACAAACGAATTGTTGCTGTCAAGAAGTCCAAAGTTGTAGATAAGAGCCAAAGCGAGCAATTCATTAACGAGGTGATTGTTGTATCACAAATTAATCATAGGAATGTGGTAAAACTCTTGGGATGTTGCTTAGAGACAGAGATTCCTTTACTGGTTTATGAATTTGTCAGCAATGGTACCCTTTTTGATTTTTTACACACTAAGGGAAAGGCAAATAATGTAACATGGAAAACTCGTCTGAGGATAGCAACAGAGACAGCAGGAGCTCTGTCATATCTACATTCAGCTGCCTCAGTACCCATTATTCATAGAGATGTGAAGAGTGCCAACATTCTCTTGGATGACACTTACACTGCTAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGACATAGCCACAATGGTGCAGGGAACAATTGGGTACTTAGACCCAGAGTATATGCAAACACACCAATTGACTGAAAAAAGTGATGTTTATAGCTTTGGTGTAGTGCTTGCGGAGCTGCTAACAGGGGAGAAATCTATTTCTTTTGACAGGCCAGGAGAGAAAAGAAGCCTTGCAATGCATTTTCTATCTTGCTTGAAAGAGGATAGCATGTTTGATGTTCTTCAAGTTGGCATCTTGGATGAAGAAAATAAGCAGGAGATCAAGGAGGTTGCTATTCTTGCTGAAAAGTGCTTGAGTGTTAAAGGGGAGGAAAGGCCAAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGAATAAGGCGAATGGAGAAGCAAGCTTGGATTAATACAGATATAAATCTACAGGAGACTCAATATTTGCTTCATGAGACACAATCTAGCATTTATGAACACGGTGACAGTAGCAGCTATCAAAATACTGGGTATGACAGCATTAGAGATCATTCACTGATTGCCTTTGATGATGGAAGATGA 2193 0.4118 MELKVKHTQLCQLLMVAVTVLVAAAADQTFPTVSAASKQALPGCKNTCGDVQVPYPFGIGNSSTDQRSCFLQDVFELTCDDDGSKLYWSNIQVLNISLQGQMDHFKQGNKFITVGCDSYGYLTSVYKEERYATGCFTRCYGNRIIDNGMCSGIGCCLVDIPPRMWNITIEAFGFREFPNESLGTCSYSFVVKTGNYTFSTSHLGRLPYTEFPLVIDWTVYDKKVLGYTNCRIAKGGDAYACSKNSYCYDEDTGLGYRCSCNPGYEGNPYHPDGCIDIDECKTANHTCIDGNHCLNTIGNYTCVCPRGQSGNGTREGGCHQRDLTIMVVIGAGAGFIVVFVGISSLYLMYQKRKQITQKEKLFKENGGLIMLQKLRTREDSSQPTRIFREDELKMATNNYDESLIIGKGGYGTVYKGFLPDKRIVAVKKSKVVDKSQSEQFINEVIVVSQINHRNVVKLLGCCLETEIPLLVYEFVSNGTLFDFLHTKGKANNVTWKTRLRIATETAGALSYLHSAASVPIIHRDVKSANILLDDTYTAKVSDFGASRLVPLDQTDIATMVQGTIGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGEKSISFDRPGEKRSLAMHFLSCLKEDSMFDVLQVGILDEENKQEIKEVAILAEKCLSVKGEERPSMKEVAMELEGIRRMEKQAWINTDINLQETQYLLHETQSSIYEHGDSSSYQNTGYDSIRDHSLIAFDDGR. 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02530 730 Gene3D Laminin 230 279 - -
Seca8g02530 730 SUPERFAMILY Protein kinase-like (PK-like) 380 670 IPR011009 -
Seca8g02530 730 FunFam Fibrillin 2 271 315 - -
Seca8g02530 730 Pfam Protein kinase domain 401 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02530 730 SMART egfca_6 276 319 IPR001881 GO:0005509
Seca8g02530 730 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 34 677 IPR045274 GO:0007166
Seca8g02530 730 FunFam Wall-associated receptor kinase 2 369 474 - -
Seca8g02530 730 Gene3D Laminin 280 318 - -
Seca8g02530 730 SMART egf_5 279 319 IPR000742 -
Seca8g02530 730 SMART egf_5 229 275 IPR000742 -
Seca8g02530 730 SUPERFAMILY EGF/Laminin 276 311 - -
Seca8g02530 730 ProSitePatterns Calcium-binding EGF-like domain signature. 276 302 IPR018097 GO:0005509
Seca8g02530 730 ProSitePatterns Protein kinases ATP-binding region signature. 405 428 IPR017441 GO:0005524
Seca8g02530 730 Gene3D Transferase(Phosphotransferase) domain 1 475 695 - -
Seca8g02530 730 SMART serkin_6 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02530 730 Pfam Calcium-binding EGF domain 276 318 IPR001881 GO:0005509
Seca8g02530 730 ProSiteProfiles Protein kinase domain profile. 399 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02530 730 Pfam Wall-associated receptor kinase galacturonan-binding 44 101 IPR025287 GO:0030247
Seca8g02530 730 FunFam Wall-associated receptor kinase 2 475 692 - -
Seca8g02530 730 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
Seca8g02530 730 Gene3D Phosphorylase Kinase; domain 1 367 474 - -
Seca8g02530 730 CDD EGF_CA 276 310 - -
Seca8g02530 730 CDD STKc_IRAK 405 672 - -
Seca8g02530 730 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 293 304 IPR000152 -
Seca8g02530 730 ProSiteProfiles EGF-like domain profile. 276 314 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02530 Seca-Chr8 56344476 56352267 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02530 39 730 Receptor kinase-like Gene Family AT1G21230 43.188 0.0 563
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca8g02530 Pkinase 1.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02530 - - gmx:100778914 918.302