Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02527 ATGAAACTGAAGATGACGCTCATGCAACTGGGCTGGGTGCTAACCGTTGCATTAGCAGCAGTTACAGCTAATCAAACTTTTACATTAGCAGAAACACCAAAACAAACCCTCCCTGGCTACAATTCCACTTGTGGAAATATTGAAATTCCATATCCATTCGGCATAGGCCTATCATCTACACCAAATCAACAACCCTGTTCCTTAGCGCCCAACTTTAATCTCACTTGTGTAAACGACTCCCAATTAATATGGGGCAACGTACAAATTTTACACATAGGCATCCAAGGTCAAATCGACGTGTCGTTTTTCGTCGCATCGGTTTGCGACGGCGACAATCGCCCCTGGCTCGACACTGCTAGTTTCAGCATCTCAAGCAAGGAAAACAAATTCATAACCGTTGGCTGTGACAGTTATGGCGTTCTCAACAGCAATTACAATGAGGAAACGTATTCAACGGGGTGCTTAACGAGATGTTATGGCAATAGAATGAGCATCGAAAATGGAACGTGTTCGGGTATAGGGTGTTGCCAGGTGGATATTCCTCTTCGAATGAGGAATATCAGTTTATTAGCATCTGAGTTCCCTAATTCAACGGAATCTTTGGGAACCTGCACTTATTCCTTTGTTGCCAAACAAGGTTCTTATAATTTTTCTACCTCTCATTTACGACACTTACCTTACACGGAATTCCCCTTGGTTCTTGATTGGACTGTGGGAGACCAAAACTGTAATGCTTCGGAGAGTGGAGTCGACTATGCATGTAAGAACAATAGCTATTGCTATGACAACGACACTGACTATGGCTATCGATGCAGATGTAAGCCAGGTTATGAAGGAAACCCATACCATCCGGATGGTTGCAATGATATTGATGAATGTAAGACAGCGAATCATACATGCATAGATGAAAATCATTGTCGCAACACCGATGGATCTTACCAATGTTTCTGTCCACATGGACAATCCGGAAATGGAACAAAAGAAGGAGGGTGCCACCGGAAAGATGTACTTACCAAGGTTGTCATTGGAGCATGTGCAGGATTTTTGGCTCTATTTGCAGGGGCTTCCTCATTGTACATAATACACCAGAAAAGGAAACTCAAAAAATTAAAAGAGAAATTCTTTCAGCAAAATGGCGGTGTCATGTTACTACAACAACTCTCTACAAGGGAAAACTCCTCTCAAACTGCTCAAATATTCACCGAAGATCAACTAAAGAAGGCTACCAACAACTATGATGAAAGCTTAATCATTGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGATTTCTACCAGATAACAGAATTGTTGCTATCAAGAAGTCCAAAATAATGGATGCAAGCCAAATCGAGCAATTCATTAACGAGGTGGTTGTTCTATCCCAAATTAATCATAGGAATGTGGTCAAACTCTTGGGATGTTGTTTAGAGACAGAAGTTCCTTTACTGGTTTATGAATTTGTTAGCAATGGTACCCTTTATGATTTTATACACACTAAAAGCAAGGCAAATAATGTAACATGGACAACTCGTCTAAGGATAGCAGCAGAGACAGCAGGATCTCTATCATATCTACATTCAGCTGCCTCAATACCCATTATCCACAGAGATGTGAAGAGTGCCGACATTCTCTTGGATGACACTTACACTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTAGTTCCACTTGATCAAACTGACATAGCCACAATGGTGCAGGGAACGATTGGCTACTTAGACCCAGAGTATATGCAAACAAGCCAACTGACTGAGAAAAGTGATGTGTATAGCTTTGGAGTAGTGCTTGTGGAGCTGCTAACAGGGGAGAAACCTCTTTCTTTTGATAGGCCAGAAGAGAAAAGAAGCCTTGCAATGCACTTTCTATCTTGCTTGAAAGAGGATCGCATGTTTGATGTTCTTCAAGTTGGCATCTTGTGTGAAGAAAATAAGCAGGAGATCAAGGAGGTTGCTATTCTTGCTGCAAAGTGCTTGAGACTTAAAGGGGAGGAAAGGCCTAGCATGAAGGAAGTGGCTATGGAGTTGGAGGGAATAAGGCTAATTGAGAAGCACCCTTGGATCAATCGAGACATAAATCTAGAGGAGAATCGATACTTGCTTCATGAGGCATCATCTAGCAATTGTGAACCAGAGGATAGTAGAAACTGTGGATATTCTGGGTATGATAGCTTGAGAGATCATGTACTAATTGCCTTTGATGATGGAAGATAA 2232 0.4153 MKLKMTLMQLGWVLTVALAAVTANQTFTLAETPKQTLPGYNSTCGNIEIPYPFGIGLSSTPNQQPCSLAPNFNLTCVNDSQLIWGNVQILHIGIQGQIDVSFFVASVCDGDNRPWLDTASFSISSKENKFITVGCDSYGVLNSNYNEETYSTGCLTRCYGNRMSIENGTCSGIGCCQVDIPLRMRNISLLASEFPNSTESLGTCTYSFVAKQGSYNFSTSHLRHLPYTEFPLVLDWTVGDQNCNASESGVDYACKNNSYCYDNDTDYGYRCRCKPGYEGNPYHPDGCNDIDECKTANHTCIDENHCRNTDGSYQCFCPHGQSGNGTKEGGCHRKDVLTKVVIGACAGFLALFAGASSLYIIHQKRKLKKLKEKFFQQNGGVMLLQQLSTRENSSQTAQIFTEDQLKKATNNYDESLIIGKGGYGTVFKGFLPDNRIVAIKKSKIMDASQIEQFINEVVVLSQINHRNVVKLLGCCLETEVPLLVYEFVSNGTLYDFIHTKSKANNVTWTTRLRIAAETAGSLSYLHSAASIPIIHRDVKSADILLDDTYTAKVSDFGASRLVPLDQTDIATMVQGTIGYLDPEYMQTSQLTEKSDVYSFGVVLVELLTGEKPLSFDRPEEKRSLAMHFLSCLKEDRMFDVLQVGILCEENKQEIKEVAILAAKCLRLKGEERPSMKEVAMELEGIRLIEKHPWINRDINLEENRYLLHEASSSNCEPEDSRNCGYSGYDSLRDHVLIAFDDGR. 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02527 743 Pfam Protein tyrosine and serine/threonine kinase 418 682 IPR001245 GO:0004672|GO:0006468
Seca8g02527 743 SUPERFAMILY Protein kinase-like (PK-like) 391 683 IPR011009 -
Seca8g02527 743 Gene3D Laminin 241 331 - -
Seca8g02527 743 ProSiteProfiles EGF-like domain profile. 244 288 IPR000742 -
Seca8g02527 743 Gene3D Transferase(Phosphotransferase) domain 1 488 701 - -
Seca8g02527 743 SUPERFAMILY EGF/Laminin 287 324 - -
Seca8g02527 743 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 306 317 IPR000152 -
Seca8g02527 743 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 32 695 IPR045274 GO:0007166
Seca8g02527 743 ProSiteProfiles Protein kinase domain profile. 412 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02527 743 Pfam Wall-associated receptor kinase galacturonan-binding 42 94 IPR025287 GO:0030247
Seca8g02527 743 FunFam Wall-associated receptor kinase 2 488 705 - -
Seca8g02527 743 CDD STKc_IRAK 418 685 - -
Seca8g02527 743 Pfam Wall-associated kinase 168 274 IPR013695 GO:0004674|GO:0016020
Seca8g02527 743 FunFam Wall-associated receptor kinase 2 382 487 - -
Seca8g02527 743 ProSiteProfiles EGF-like domain profile. 289 327 IPR000742 -
Seca8g02527 743 FunFam Wall-associated receptor kinase 2 290 331 - -
Seca8g02527 743 Pfam Calcium-binding EGF domain 289 331 IPR001881 GO:0005509
Seca8g02527 743 ProSitePatterns Calcium-binding EGF-like domain signature. 289 315 IPR018097 GO:0005509
Seca8g02527 743 SMART egfca_6 289 332 IPR001881 GO:0005509
Seca8g02527 743 CDD EGF 254 282 - -
Seca8g02527 743 ProSitePatterns Protein kinases ATP-binding region signature. 418 441 IPR017441 GO:0005524
Seca8g02527 743 Gene3D Phosphorylase Kinase; domain 1 378 487 - -
Seca8g02527 743 CDD EGF_CA 289 323 - -
Seca8g02527 743 SMART egf_5 242 288 IPR000742 -
Seca8g02527 743 SMART egf_5 292 332 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02527 Seca-Chr8 56294800 56297884 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02527 44 743 Receptor kinase-like Gene Family AT1G21230 46.058 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca8g02527 PK_Tyr_Ser-Thr 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02527 - - gmx:100781051 1046.57