Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02523 ATGGAAAAGGCAAAGAACACGCAGCTTTGCCGTGTTTTATTGGTTGCATTAGCGCTGCAGGTAGTAGCAGTTGCAGCCGATAAAGCCATTTCTCCCGTCGTTGCAGCACCAAAACAAACCCTCCCTGGATGCAATTACACTTGTGGAGATGTCAAAATTCCATATCCATTTGGCACAGGCAAATCATCTACACCAGATCAACAACCCTGTTCATTTGAGCCCAAATTTAATCTCACTTGTGTAAACGACTCCCAATTATTATGGGGTAACGTACAAGTTTTACACATCGACATCCAAGGTCAAATGGATGTTTTGTTTAACATCTCATGGCATTGCTATCTGAGAAATGGAAGTGGATATCACAGCTACCCTTGGATGCGTACTGCTGCTTTCAGCATTTCAAGCAAGGAAAACAAGTTTCTAACTGTCGGCTGCGACAGTTACGGCTATCTGAACAGCGCTTTCAACGGGGAGTTATATTCAACAGGGTGCTTGACAAGATGTTATGGGAATAGAATGATCGTTAACGGAACGTGTTCGGGCATAGGATGTTGCCAGGTGGATATTCCTCTTAGAATGAGGAATATTAGTGTACAAGCATTTGGCTTCAATTCAACGGAATCTTTGGGAACCTGCAGCTATTCCTTTGTTGTCAAAGATGGAAACTATACTTTTAATTCCAGTGATTTGCAAGATTTTCCTTACACGGAATTCCCTTTGGTTCTTGATTGGAGCGTGGGAGACCAAAATTGCAATGCTTCAAAAGGTGGAGTCGACTATGCCTGCAGGAACAATAGCCACTGCGTTGACAAGGACACTGATATTGGTTACCGATTCTTATGCAATCCAGGTTATGATGGGAACCCCTACCATCCGGATGGCTGCTTAGACGTCAATGAATGTACAACATCAAATCATACATGCCTAGACGGAAATCATTGTCTCAACACCGATGGGTCTTACAGATGCTTTTGTCCTAAGGGGCAATCCGGCGATGGAACAAAGGCAGGAGGGTGCCATCGACGTGAACCTACCAAGATTATTATCGATGAGCTTAAGAAAGCTACCAACAACTATGATGAGAACTTAATAATTGGTAGAGGAGGTTATGGTACAGTTTTCAAAGGAATTCTGTCAGATAAACGAATTGTTGCTGTCAAAAAGTCCAAAATAGTAGATAAGAGTCAAATTGAGCAATTCATTAATGAGGTAGTTGTTGTATCACAAATCAATCATAGGAATGTGGTCAAACTGTTAGGATGTTGCCTAGAGACAGAAATTCCTTTACTGGTTTATGAATTTGTTAGCAATGGTACCCTTTATAATTTTATACATAATAAGCCAAATAATGTAACATGGAAAACCTGTCTAAGGATAGCAGCAGAGACAGCAGGAGCTCTATCATATCTGCATTCAGGTGCCTCAATACCCATTATCCACAGAGATGTGAAGAGTGCCAACATTCTCTTGGATGACACTTACACTACCAAAGTTTCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATGAAACAGATATAGCCACAATGGTGCAGGGAACAATTGGCTACTTAGACCCAGAGTATATGCAAACACACCAATTGACTGAGAAGAGTGATGTTTATAGCTTTGGTGTAGTGCTTGCGGAGCTGCTAACAGGGGAGAAACCTGTTTCTTTTGACAGGCCAGAAGAGAAAAGAAGCCTTGCAATGCATTTTCTATCTTGGTTGGAAGAGGATCGTATGTTTGAAGTTCTGCAAGCAGGTATTGTTAATGAAGAAAATAAGCAGGAGATTAAGGAAGTTGCTATTCTTGCAGCAAGATGCTTAAGACTTCAAGGGGAGGAAAGGCCTAGTATGAAGGAAGTGGCTATGGAGTTGGAGGGAATAAGGCTAATGGAAAAGCACCCTTGGGTCAATACAAACCCAAATGTAGAGGAGACTCGGTACCTACTTCATGAGGCATCATCTAGCATTTATGAACAGGGTGATAGCAGCAACCATGGATGTACTGGGTACGACAGCTTGAGGGATCATGTGCTAAATGCCTTTGATGACGGAAGATGA 2067 0.4194 MEKAKNTQLCRVLLVALALQVVAVAADKAISPVVAAPKQTLPGCNYTCGDVKIPYPFGTGKSSTPDQQPCSFEPKFNLTCVNDSQLLWGNVQVLHIDIQGQMDVLFNISWHCYLRNGSGYHSYPWMRTAAFSISSKENKFLTVGCDSYGYLNSAFNGELYSTGCLTRCYGNRMIVNGTCSGIGCCQVDIPLRMRNISVQAFGFNSTESLGTCSYSFVVKDGNYTFNSSDLQDFPYTEFPLVLDWSVGDQNCNASKGGVDYACRNNSHCVDKDTDIGYRFLCNPGYDGNPYHPDGCLDVNECTTSNHTCLDGNHCLNTDGSYRCFCPKGQSGDGTKAGGCHRREPTKIIIDELKKATNNYDENLIIGRGGYGTVFKGILSDKRIVAVKKSKIVDKSQIEQFINEVVVVSQINHRNVVKLLGCCLETEIPLLVYEFVSNGTLYNFIHNKPNNVTWKTCLRIAAETAGALSYLHSGASIPIIHRDVKSANILLDDTYTTKVSDFGASRLVPLDETDIATMVQGTIGYLDPEYMQTHQLTEKSDVYSFGVVLAELLTGEKPVSFDRPEEKRSLAMHFLSWLEEDRMFEVLQAGIVNEENKQEIKEVAILAARCLRLQGEERPSMKEVAMELEGIRLMEKHPWVNTNPNVEETRYLLHEASSSIYEQGDSSNHGCTGYDSLRDHVLNAFDDGR. 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02523 688 SUPERFAMILY EGF/Laminin 297 334 - -
Seca8g02523 688 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 36 637 IPR045274 GO:0007166
Seca8g02523 688 ProSitePatterns Calcium-binding EGF-like domain signature. 297 323 IPR018097 GO:0005509
Seca8g02523 688 CDD STKc_IRAK 365 630 - -
Seca8g02523 688 SMART egf_5 250 296 IPR000742 -
Seca8g02523 688 SMART egf_5 300 340 IPR000742 -
Seca8g02523 688 ProSitePatterns Protein kinases ATP-binding region signature. 365 388 IPR017441 GO:0005524
Seca8g02523 688 Pfam Protein tyrosine and serine/threonine kinase 364 627 IPR001245 GO:0004672|GO:0006468
Seca8g02523 688 SUPERFAMILY Protein kinase-like (PK-like) 343 628 IPR011009 -
Seca8g02523 688 ProSitePatterns Serine/Threonine protein kinases active-site signature. 478 490 IPR008271 GO:0004672|GO:0006468
Seca8g02523 688 FunFam Wall-associated receptor kinase 2 338 434 - -
Seca8g02523 688 FunFam Fibrillin 2 292 337 - -
Seca8g02523 688 FunFam Wall-associated receptor kinase 2 435 650 - -
Seca8g02523 688 Pfam Wall-associated receptor kinase galacturonan-binding 44 101 IPR025287 GO:0030247
Seca8g02523 688 CDD EGF_CA 297 332 - -
Seca8g02523 688 ProSiteProfiles EGF-like domain profile. 297 335 IPR000742 -
Seca8g02523 688 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 314 325 IPR000152 -
Seca8g02523 688 Gene3D Laminin 248 334 - -
Seca8g02523 688 Gene3D Phosphorylase Kinase; domain 1 335 434 - -
Seca8g02523 688 SMART egfca_6 297 340 IPR001881 GO:0005509
Seca8g02523 688 SMART serkin_6 359 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02523 688 Pfam Calcium-binding EGF domain 297 330 IPR001881 GO:0005509
Seca8g02523 688 ProSiteProfiles Protein kinase domain profile. 359 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02523 688 Gene3D Transferase(Phosphotransferase) domain 1 435 649 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02523 Seca-Chr8 56202648 56208687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02523 11 635 Receptor kinase-like Gene Family AT1G16260 37.846 4.25e-129 396
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca8g02523 PK_Tyr_Ser-Thr 1.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02523 - - gmx:106795446 837.41