Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02518 ATGGGACTCATCAAGAGCACGCACAAGCAACTGGCCCTGGCACTGATGGTGATTGCATTAGCAAGCGTAGGAGCAGCTGTAGCTGACCAAGCCCTTCCCGGCTGCAAAAGCAAATGTGGAAATGTTTCAATTCCATATCCATTTGGCATAGGCGTATCAATTGTCAACCGTCGTCAAAACTGTTTCCTGCAGGAAGAAATGGAACTCAGATGCGATAAATCCATTTTATATCGCGGAAATGGTACGGTCCAAATTTTGAACATAATCCTCGCAGGTAAAATGGAGATGCTTGCTACTATCTCCAGGGTTTGCATAAACGGCTCGAAGATAACAAGTAGTCGTCGCAATCTGAGAACTCCGGCTTTCGCCATTTCTAGAGAGGATAACAAATTCGTGAGTGTAGGCTGTGACACTTACGGTTATCTCAATAGTTTTCGCAACAATAAGACGTACTCAACCGGATGCTTAACAAAATGTGCCAGCTATAATGACATGAAAACTATGCAATTGGACGGAAACTGTACGGGGATTGGGTGTTGCCAGGTGGATATTCCTCCTGCAATGAAAAATATTAGTACACGAGCATTTAGCTTTAACAATTTCACAAACTCTTCGGGTTTCAACAACTGCAGTTATTCCTTTGTTGTCAAAAACGACGGTTATAATTTTTCTCTGAGTCATTTGAAGTATGGTCTCCCATTCAAGAAGGCTCCCTTTGTTGTTGATTGGAGTGTTAGAAACGTGACTTGTGAAATTTCTAAGCAGAGAGGAGACTATGCATGCAAGGCTAATAGCGAATGTCAGAATTGGACCACTGGATCTGGTTATCGATGCATATGTAAGGATGGTTTTGAGGGGAACCCATACCATCCGGATGGTTGTCAAGATATTCAAGAATGTAAGAGTAGTGGTCATAATCACGATTGCATAAGTGATAGTCACTGTGAAGAAACCGAAGGGTCTTTCAAATGTTTTTGTCCTGATGGGCAAATTGGAGATGGAAGAAGGGAAGGTGCAGGAGAAGGATGCCGGCAAAAACACAGAGAAGATGTAATTACAAGGGTTACCATTGGTGCAGCTGCAGGACTTGTGGCTTTGTTTGTGGGGATTTCTTGGCTATACTTGATATACCAGAAAAGAAAACTCATCAAATTAAAGGAAAAGTTCTTTCGACAAAATGGCGGTATAATTTTGCAACAACAACTCTCTACAATCGAGGATTCCTCCCAGACTACTAAAATGTTCACAGCAGAGCAACTTAAGAAGGCCACCAACAATTATGATGAAAGCTTAATCATCGGTAAAGGAGGTTTTGGTACAGTTTTCAAAGGAATTCTATCAGATAATAGGATTGTTGCAATCAAGAAATCCAAAGTAGTGGATCAGAGCCAAATTGAGCAATTCATCAATGAGGTGATTGTACTATCCCAAATTAACCATAGGAATGTGGTGAAACTCTTGGGTTGTTGTTTAGAGACAGAAGTACCTTTATTAGTTTATGAATTTGTTAACAAGGGTACTCTTTTTGATTATATACACAATGAAGGCAAGGTGAGTAATGTATCTTGGGAAACACGTTTAAGGATAGCAACAGAGTCAGCAGGAGCTTTATCTTACTTACACTCAGCTGCCTCAATTCCCATTATCCACAGGGATGTGAAGAGTACAAACATTCTCTTAGATGACAATCTCATTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAGCTAGCCACAATGGTGCAAGGAACCCTTGGTTACCTGGATCCAGAGTACATGCTAACAAGCCAACTCACTGTGAAAAGTGATGTGTATAGCTTTGGAGTAGTTCTTGTGGAGCTACTAACAGGGGAGAAATCTCTTTCTTTTGATAGGCCAGAAGAGAAAAGAAGCCTTGCAATGCACTTTCTATCTTGCTTGAAAGAGGATCACATGTTTGATGTTCTTCAAGTTGGCATTTTGAATGAAGAAAATAAGCAGGAGATCAAGGAGGTTGCTGTTCTTGCAGCAAAGTGCTTGAGACTAAGAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGCAATGGAGTTGGAGGGAATAAGGTTAATGAAGAAGCACCCATGGATCAATACAGATCAAAATTTGGAGGAGACCCAATACTTGCTTCATGGGGCATCTAGCATTCATGACCATGGTGATAGTAGTAACTACCAAAGTACTATGTATGATAGCTTGAGAGATCATGCACTAATTGCCTTCGATGATGGAAGATGA 2274 0.4116 MGLIKSTHKQLALALMVIALASVGAAVADQALPGCKSKCGNVSIPYPFGIGVSIVNRRQNCFLQEEMELRCDKSILYRGNGTVQILNIILAGKMEMLATISRVCINGSKITSSRRNLRTPAFAISREDNKFVSVGCDTYGYLNSFRNNKTYSTGCLTKCASYNDMKTMQLDGNCTGIGCCQVDIPPAMKNISTRAFSFNNFTNSSGFNNCSYSFVVKNDGYNFSLSHLKYGLPFKKAPFVVDWSVRNVTCEISKQRGDYACKANSECQNWTTGSGYRCICKDGFEGNPYHPDGCQDIQECKSSGHNHDCISDSHCEETEGSFKCFCPDGQIGDGRREGAGEGCRQKHREDVITRVTIGAAAGLVALFVGISWLYLIYQKRKLIKLKEKFFRQNGGIILQQQLSTIEDSSQTTKMFTAEQLKKATNNYDESLIIGKGGFGTVFKGILSDNRIVAIKKSKVVDQSQIEQFINEVIVLSQINHRNVVKLLGCCLETEVPLLVYEFVNKGTLFDYIHNEGKVSNVSWETRLRIATESAGALSYLHSAASIPIIHRDVKSTNILLDDNLIAKVSDFGASRLVPLDQTELATMVQGTLGYLDPEYMLTSQLTVKSDVYSFGVVLVELLTGEKSLSFDRPEEKRSLAMHFLSCLKEDHMFDVLQVGILNEENKQEIKEVAVLAAKCLRLRGEERPSMKEVAMELEGIRLMKKHPWINTDQNLEETQYLLHGASSIHDHGDSSNYQSTMYDSLRDHALIAFDDGR. 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02518 757 Pfam Calcium-binding EGF domain 296 329 IPR001881 GO:0005509
Seca8g02518 757 ProSiteProfiles Protein kinase domain profile. 427 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02518 757 CDD STKc_IRAK 433 700 - -
Seca8g02518 757 SMART serkin_6 427 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02518 757 CDD EGF_CA 296 333 - -
Seca8g02518 757 ProSitePatterns Protein kinases ATP-binding region signature. 433 456 IPR017441 GO:0005524
Seca8g02518 757 SUPERFAMILY Protein kinase-like (PK-like) 407 698 IPR011009 -
Seca8g02518 757 Pfam Wall-associated receptor kinase galacturonan-binding 35 92 IPR025287 GO:0030247
Seca8g02518 757 SUPERFAMILY EGF/Laminin 295 334 - -
Seca8g02518 757 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 710 IPR045274 GO:0007166
Seca8g02518 757 Gene3D Laminin 249 299 - -
Seca8g02518 757 Gene3D Phosphorylase Kinase; domain 1 393 502 - -
Seca8g02518 757 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Seca8g02518 757 Gene3D Transferase(Phosphotransferase) domain 1 503 721 - -
Seca8g02518 757 FunFam Wall-associated receptor kinase 2 503 720 - -
Seca8g02518 757 SMART egf_5 249 295 IPR000742 -
Seca8g02518 757 SMART egf_5 299 344 IPR000742 -
Seca8g02518 757 SMART egfca_6 296 344 IPR001881 GO:0005509
Seca8g02518 757 Gene3D Laminin 300 337 - -
Seca8g02518 757 FunFam Wall-associated receptor kinase 2 397 502 - -
Seca8g02518 757 Pfam Protein kinase domain 429 693 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02518 Seca-Chr8 55889926 55893308 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02518 12 757 Receptor kinase-like Gene Family AT1G21230 45.370 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca8g02518 Pkinase 4.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02518 - - gmx:100819535 1054.66