Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02517 ATGGGACTCATCAAGAGCACGCACAAGCAACTGGCCCTGACACTGGTGATGATTGCATTAGCAAGCGTAGGAGCAGCTACTACTGTAGCTGACCAAGCCCTGCCCGGCTGCGAAAGCAAATGTGGAAATGTTTCAATTCCATATCCATTTGGCATAGGCGTATCAATTGTCACCGGTCAAAACTGTTTCCTGCAGAAAAAATTGGAACTCAGTTGCAATGAATCCATTTTATATCCACGAAAAGGTAACATACAAATTTTGGACATAACCCTCGCAGGTCAAATGGAAATGCTTGCTACCATCTCCAGGGTTTGCATAAACGGCTCGAAGATAACAAGAAATCGTCGCAATCTGAGACTTACGACTTTCGCGATTTCTAGAGAAGATAACAAATTCGAGAGTGTAGGCTGTGACACTTACGGTTATCTCAATAGTTTTAGCAACAATAAGACGTACTCAACCGGATGCTTAACAAGATGTGCCAGCTATGATGACATGAAAACTATGCAGCTTGATGGAAACTGTACGGGGATTGGGTGTTGCCAGGTGGATATTCCTCCTGCAATGAAGAATGTTAGTACACGAGCATTTAGCTTTAACAATTTCACAAACTCTTCTGGTTTCAACAACTGCAGTTATTCCTTTGTTGTCAAAAACGGCGGTTATAATTTTTCTCTGAGTCATTTGAAGTATGGTCTCCCATTTAAGAAGGCTCCGCTTGTTGTTGATTGGAGTGTTAGAAACGTGACTTGTGAAATTTCCCAGCAGAGAGGAGATTATGCATGCAAGGCTAATAGCGAATGTCAGAATTGGACCACTGGATCTGGTTATCGATGCATATGTAAAGAGGGTTATGAGGGGAACCCATACCATCCGGATGGTTGTCAAGATATTCAAGAATGTAAGAGTGATAAACACGATTGCATAAGTGAAAGTCACTGTGAAGAAACTGAAGGGTCTTTCAAATGTTTTTGTCCTGATGGTCAAATTGGAGATGGAAAAAGGGAAGGTGAAGGAGAAGGATGCCGGCATAAGCAAAGAGAAGATGTAGTTACAAGGGTTACCATTGGTGCATCTGCAGGACTCGTGGCTTTGTTTGTGGGGATTTCTTGGCTATATTTGATATACCAGAAAAGAAAACTCATCAAATTAAAGGAAAAGTTTTTTCGACAAAATGGTGGCATCATTTTGCAACAACAACTCTCTACAATTGAAGACTCCTCCCAGTCTACTAAAATGTTCACAGCAGAGCAACTTAAGAAGGCCACCAACAATTATGATGAAAGCTTAATAATCGGTAAAGGAGGTACAGTTTTCAAAGGCATTCTATCAGATAATAGGATTGTTGCAATCAAGAAATCCAAAGTAGTGGATCAGAGCCAAATTGAGCAATTCATTAATGAGGTGGTTGTACTATCCCAAATTAACCATAGGAATGTGGTCAGACTCTTGGGTTGTTGTTTAGAGACGGAAGTACCTTTACTAGTTTATGAATTTGTTAACAAGGGTACCCTTTTTGATTATATACACAATGAAGGCAAGGTGAGTAATGTATCTTGGGAAACACGTTTAAGGATAGCAACAGAGGCAGGAGGAGCTTTATCTTACTTGCACTCAGCTGCCTCAATTCCCATTATCCATAGAGATGTAAAGAGTACAAACATTCTCTTGGATGACAATCTCATTGCCAAAGTGTCTGATTTTGGAGCTTCAAGATTGGTTCCACTTGATCAAACTGAGCTAGCCACAATGGTGCAAGGAACCCTTGGTTACCTGGATCCAGAGTACATGCTCACAAGCCAACTCACTGTGAAAAGTGATGTGTATAGCTTTGGAGTAGTTCTTGTGGAGTTGCTAACAGGGGAGAAACCTCTGTCTTTTGACAGGCCAGAAGAGAAAAGAAGCCTTGCAATGCACTTTCTATCTTGCTTGAAAGAGGATCGCATGTTTGATGTTCTTCAAGTTGGCATCTTGTGTGAAGAAAATAAGCAGGAGATCAAGGAGGTTGCTGTTCTTGCAGCAAAATGCTTGAGACTAAGAGGGGAGGAGAGGCCTAGCATGAAAGAAGTGGTAATGGAGTTGGAGGGAATAAGGCTAATGGACAAGCACCCATGGATCAATACAGATCAAAATTTGGAGGAAACCCAATACTTGCTTCATGGGGCATCTAGCATTCATGACCATGGTGATAGTAGTAACTACCAAAGTACTATGTATGATAGCTTGAGAGATCATACACTAATTGCCTTTGATGATGGAAGATGA 2265 0.4119 MGLIKSTHKQLALTLVMIALASVGAATTVADQALPGCESKCGNVSIPYPFGIGVSIVTGQNCFLQKKLELSCNESILYPRKGNIQILDITLAGQMEMLATISRVCINGSKITRNRRNLRLTTFAISREDNKFESVGCDTYGYLNSFSNNKTYSTGCLTRCASYDDMKTMQLDGNCTGIGCCQVDIPPAMKNVSTRAFSFNNFTNSSGFNNCSYSFVVKNGGYNFSLSHLKYGLPFKKAPLVVDWSVRNVTCEISQQRGDYACKANSECQNWTTGSGYRCICKEGYEGNPYHPDGCQDIQECKSDKHDCISESHCEETEGSFKCFCPDGQIGDGKREGEGEGCRHKQREDVVTRVTIGASAGLVALFVGISWLYLIYQKRKLIKLKEKFFRQNGGIILQQQLSTIEDSSQSTKMFTAEQLKKATNNYDESLIIGKGGTVFKGILSDNRIVAIKKSKVVDQSQIEQFINEVVVLSQINHRNVVRLLGCCLETEVPLLVYEFVNKGTLFDYIHNEGKVSNVSWETRLRIATEAGGALSYLHSAASIPIIHRDVKSTNILLDDNLIAKVSDFGASRLVPLDQTELATMVQGTLGYLDPEYMLTSQLTVKSDVYSFGVVLVELLTGEKPLSFDRPEEKRSLAMHFLSCLKEDRMFDVLQVGILCEENKQEIKEVAVLAAKCLRLRGEERPSMKEVVMELEGIRLMDKHPWINTDQNLEETQYLLHGASSIHDHGDSSNYQSTMYDSLRDHTLIAFDDGR. 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02517 754 FunFam Wall-associated receptor kinase 2 500 717 - -
Seca8g02517 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 26 707 IPR045274 GO:0007166
Seca8g02517 754 Gene3D Laminin 292 335 - -
Seca8g02517 754 SUPERFAMILY EGF/Laminin 296 332 - -
Seca8g02517 754 CDD STKc_IRAK 432 697 - -
Seca8g02517 754 SMART egf_5 250 296 IPR000742 -
Seca8g02517 754 SMART egf_5 300 343 IPR000742 -
Seca8g02517 754 Pfam Protein kinase domain 432 691 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02517 754 Gene3D Transferase(Phosphotransferase) domain 1 500 717 - -
Seca8g02517 754 Pfam Calcium-binding EGF domain 297 328 IPR001881 GO:0005509
Seca8g02517 754 ProSiteProfiles EGF-like domain profile. 297 332 IPR000742 -
Seca8g02517 754 Gene3D Laminin 260 291 - -
Seca8g02517 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Seca8g02517 754 SMART serkin_6 426 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02517 754 CDD EGF_CA 297 332 - -
Seca8g02517 754 SUPERFAMILY Protein kinase-like (PK-like) 406 695 IPR011009 -
Seca8g02517 754 FunFam Fibrillin 2 292 336 - -
Seca8g02517 754 Pfam Wall-associated receptor kinase galacturonan-binding 37 94 IPR025287 GO:0030247
Seca8g02517 754 ProSiteProfiles Protein kinase domain profile. 424 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02517 754 FunFam Wall-associated receptor kinase 2 396 499 - -
Seca8g02517 754 Gene3D Phosphorylase Kinase; domain 1 400 499 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02517 Seca-Chr8 55781393 55785504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02517 14 754 Receptor kinase-like Gene Family AT1G21230 45.623 0.0 610
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca8g02517 Pkinase 3.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02517 - - gmx:100819535 1046.96