Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02508 ATGAAACCAGAACAGACAGAGGAATGTGCTACATATAAAATTTGTACTTGCAAGCATTGTGGTGACAAAGCAGATGGGACAGACTGTTTGGTCTGTGATTCATGCGAGGAGATTTATCATGTGTCCTGTATTGAGCCTGCTGTGAAAAAAATACCCCACAAAATCTGGTTCTGTGCCAATTGTACTGCTAGTGGAATTGGATCTCGACATGAGAATTGTGTGGTTTGTGAAAGGTTGAATGTCCCAAAGACCCTGAACAACATTGTTGGTGAGGAAAGCATCCCTACAAATGAAGAAACGTTAAATGAATTGGATGAGAATTCAAATTGTACTCATGATGGGATTGAAGTTTCCATAGGTGGAAGAAACTCATCTGACTGCAAAATTTGTCGACAGGAGGTGAATGGTGAAAAAGTAAAAATCTGTGGTCACTCTTTTTGCCCCAGTAAATACTACCATGTAAGGTGTTTGTCAAGTAAGCAGATTAAATCATATGGTCACTGTTGGTACTGTCCATCTTGTTTATGCCAAGTTTGCTTAACTGATCGAGATGATGATAAGATTGTTCTCTGTGATGGCTGTGATCATGCATACCATATCTTTTGCATGAAACCTCCACAAAATTCTATTCCAAGAGGGAAATGGTTCTGCAGAAAATGTGATGCAGGGATCCAAGCAATACGCGGGGCAAAAATGGCCTATGAGAGTAACAAATGGAGAGCTGGTGAAAATGTTTCAAATCTAAATGATGATATCGATAAGAAATGGAACAATACAGAAGGGCAAGAATTAGACAAAGTTGGAGGAATGGACATGCTTTTAACTGCAGCCAATACTCTGAATTTTGAAGAGAACTTAGCTACAGTACAGATTGACTCTCAGAGAACATGA 891 0.3928 MKPEQTEECATYKICTCKHCGDKADGTDCLVCDSCEEIYHVSCIEPAVKKIPHKIWFCANCTASGIGSRHENCVVCERLNVPKTLNNIVGEESIPTNEETLNELDENSNCTHDGIEVSIGGRNSSDCKICRQEVNGEKVKICGHSFCPSKYYHVRCLSSKQIKSYGHCWYCPSCLCQVCLTDRDDDKIVLCDGCDHAYHIFCMKPPQNSIPRGKWFCRKCDAGIQAIRGAKMAYESNKWRAGENVSNLNDDIDKKWNNTEGQELDKVGGMDMLLTAANTLNFEENLATVQIDSQRT. 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02508 296 ProSitePatterns Zinc finger PHD-type signature. 15 61 IPR019786 -
Seca8g02508 296 PANTHER OS02G0192300 PROTEIN 2 110 - -
Seca8g02508 296 SUPERFAMILY FYVE/PHD zinc finger 122 175 IPR011011 -
Seca8g02508 296 SUPERFAMILY FYVE/PHD zinc finger 11 63 IPR011011 -
Seca8g02508 296 ProSiteProfiles Zinc finger PHD-type profile. 14 64 IPR019787 -
Seca8g02508 296 Gene3D - 1 64 - -
Seca8g02508 296 ProSiteProfiles Zinc finger PHD-type profile. 173 223 IPR019787 -
Seca8g02508 296 SUPERFAMILY FYVE/PHD zinc finger 175 223 IPR011011 -
Seca8g02508 296 ProSiteProfiles Zinc finger RING-type profile. 127 174 IPR001841 -
Seca8g02508 296 SMART PHD_3 178 221 IPR001965 -
Seca8g02508 296 SMART PHD_3 126 175 IPR001965 -
Seca8g02508 296 SMART PHD_3 16 62 IPR001965 -
Seca8g02508 296 ProSitePatterns Zinc finger PHD-type signature. 168 220 IPR019786 -
Seca8g02508 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 226 IPR013083 -
Seca8g02508 296 Pfam PHD-finger 17 63 IPR019787 -
Seca8g02508 296 Pfam PHD-finger 176 221 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02508 Seca-Chr8 55381520 55382410 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02508 16 62 C2H2 Transcription Factor Family AT3G01460 38.298 5.35e-06 46.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g02508 PHD 1e-13 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02508 - - gmx:100810450 501.516