Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02504 ATGTCGTGGAGCACAGCTAGTAAGGTCATCAAGTGCAGAGCTGCGGTGGCATGGGAAGCAGGGAAGCCTCTAGTGATAGAAGAGATAGAGGTGGCGCCACCGCAGAGAGGTGAAGTGCGTTTGAAGATCCTCTTTAACTCTCTTTGCCGTTCTGATATTTACTGGTGGGAGGCAAAGGACCAGACTCCGCTGTTTCCACGTATCTTGGGTCATGAGGCTGCAGGGATTGTGGAAAGCATTGGAGAGGGTGTAACTCATCTCAAACCTGGTGACCATGCCCTCCCAGTGTTCACAGGGGAGTGTGGGGAATGCACACATTGCAAGTCAACCGAGAGCAACTTGTGTGAGCTACTCGGTATCGACACTGATAGAGGAGTTATGCTCAGTGATGGCAAAACAAGATTCTCCAAAAATGGACAACCCATATACCACTTCGTGGGAACCTCTACATTCAGTGAATACACCGTTGTCCATGCTGGGTGTGTTGCAAAGATCAACCCTGCTGCTCCACTTGACAAAGTTTGTGTTCTCAGTTGCGGATTTTGTACAGGTTTTGGCGCTACTGTAAATGTTGCAAAACCAAAGCCTAATTCCTCTGTTGCTGTCTTTGGATTAGGAGCTGTTGGTCTTGCTGCTGCTGAAGGGGCAAGGGTTTCTGGTGCATCTAGGATCATTGGGGTTGATTTACTTCCGAACCGATTTGAACAAGCCAAAAAATTTGGGGTCACTGACTTTGTGAACCCGAAAGATCATGACAAACCTGTACAACAGGTCATTGCTGAAATGACTAATGGAGGAGTAGATTGTGCTCTTGAATGTACTGGAAACATCCAAGCTTCGATCTCAACATTTGAATGTGTTCATAATGGTTGGGGTGTTGCTGTACTTGTTGGTGTGCCAACAAAGGATGCTGAGTTCAGAACTCATCCTATGAATTTCTTGGAAGGGAGAACTCTTAAGGGTACCTTTTATGGAAACTACAAACCCCGCACTGGACTTCCTTTAGTTGTGGAGAAGTACATGAACAAGGAGCTGGAACTGGACAAATTTATCACTCACTCTGTCCCATTCTCGGAGATTAATAAAGCATTTGAATTAATGCTGAAAGGGGAAGGCATAAGGTGCCTTATCTACATGGAAGAGTAA 1146 0.4599 MSWSTASKVIKCRAAVAWEAGKPLVIEEIEVAPPQRGEVRLKILFNSLCRSDIYWWEAKDQTPLFPRILGHEAAGIVESIGEGVTHLKPGDHALPVFTGECGECTHCKSTESNLCELLGIDTDRGVMLSDGKTRFSKNGQPIYHFVGTSTFSEYTVVHAGCVAKINPAAPLDKVCVLSCGFCTGFGATVNVAKPKPNSSVAVFGLGAVGLAAAEGARVSGASRIIGVDLLPNRFEQAKKFGVTDFVNPKDHDKPVQQVIAEMTNGGVDCALECTGNIQASISTFECVHNGWGVAVLVGVPTKDAEFRTHPMNFLEGRTLKGTFYGNYKPRTGLPLVVEKYMNKELELDKFITHSVPFSEINKAFELMLKGEGIRCLIYMEE. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02504 381 Gene3D - 20 371 - -
Seca8g02504 381 Pfam Zinc-binding dehydrogenase 207 327 IPR013149 -
Seca8g02504 381 Pfam Alcohol dehydrogenase GroES-like domain 37 164 IPR013154 -
Seca8g02504 381 FunFam alcohol dehydrogenase 1-like isoform X1 20 183 - -
Seca8g02504 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 170 343 IPR036291 -
Seca8g02504 381 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 70 84 IPR002328 GO:0008270|GO:0016491
Seca8g02504 381 FunFam Alcohol dehydrogenase class-P 184 322 - -
Seca8g02504 381 SUPERFAMILY GroES-like 5 187 IPR011032 -
Seca8g02504 381 PANTHER ALCOHOL DEHYDROGENASE 8 377 - -
Seca8g02504 381 CDD alcohol_DH_plants 10 377 - -
Seca8g02504 381 Gene3D - 184 322 - -
Seca8g02504 381 SUPERFAMILY GroES-like 330 378 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02504 Seca-Chr8 55259009 55262332 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02504 38 371 Monolignol Biosynthesis Gene Families AT1G72680 25.223 4.86e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02504 K18857 - gmx:100775490 667.922