Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02488 ATGGTTACATTAGCAGTTGCAGCTGATCAAGCCCTTTCCCCAGAAGTAGCCACACCAAAACAAACGTTGCCTGCTGGCTGCAATTACACCTGTGGAGATGTCGAAATTCCATATCCATTCGGCATAGGCTTATCATCTACACCAGATCAGCGACCCTGTTATTTGGAGCCCAAATTTAATCTCACTTGTGTAAACGACTCCCAATTATTATGGGGTAACGTACCAGTTTTACACATTGACATCCAAGGTCAAATGGACGTGTTGTTTCAGGTCTCATGGCATTGCTATAAGTTAAATGGAAGTGATTATTACAACTACCCTTGGATGCGTACTGCTACTTTCAGCATTTCTAGCAAGGAAAACAAGTTCCTAATTGTCGGCTGCAACAGTTTCGGCTATCTCGATAGCGTATTCGAGGGAAGAAAATATTCAACTGGATGCTTAACGAGATGTTACGGCAATAGGAAGGGGATAAAAAATGGAACGTGTTCGGGTATAGGGTGTTGCCAGGTGGATATTCCTCCTAATATGAGGAATATCACTATAGAAGCATTTGGCTTCCGCTATTTTCCGACTGAATCTTTGGGAACATGCAGCTTTTCCTTTGTTGTCAAACAAGGCAACTATACTTTTTCTACCTGTCATTTAGACTATTTTCCTAATGCGACATTCCCTTTGGTTCTTGATTGGAGCGTGGGAAACATGAGCTGTAATGCTTCCGAGGGTGGAGCCGACTATGCATGCAGGGAGAACAGCTATTGCGACGACGAGGACACAGATATTGGTTACCGATGCAGATGCAATCAAGGTTACGAAGGAAACCCCTACCATCCGGATGGCTGCACAGACATTGACGAATGTAAGACATCGAATCATACATGCTTAGATATATATCATTGTCTCAACACCGATGGGTTTTACCAATGTTTCTGTCCACCTGGTCAATCCGGAAATGGAACAAAAGAAGGACGGTGCCACCGGAGAGATGTACTTACTAAGGTTGTCATTGGAGTTGGAGCCGGATTTATTGTTCTATTTGTGGCGACTTCTTCATTGTACTTAATATACCAAAAAAGGAAACTAATCAAACAAAAAGAGAAATTCTTTCAAGAGAATGGAGGTTTCATTTTGCTACAGCAGCTCCGTACAAGAGAAGACTCATCCCAACTCCGTACAAGAGATGACTCATCCCAAGCAACTCAAGTTTTCACAGAAAATGAACTAAAGAAGGCCACCAACAACTTTGATGAGAGTTTAATCATTGGTAAAGGAGGTTATGGAACTGTTTACAAAGGAATTCTACCTGATAAACGAATTGTTGCTATCAAGAAGTCCAAAATTGTAGATAAGAGCCAAATTGAGCAATTCATTAATGAGGTGGTTCTTCTATCCCAAATCAATCATAGGAATGTGGTCAAACTCTTAGGGTGTTGCTTAGAGGCAGAAGTTCCTTTACTAGTATATGAATTTGTCAGCAATGGTACCCTTTTTGATTTTATTCACACTAAAAGAAAGCCCAACGATAATGTAACATGGAAAACTCGTCTAAGGATAGCAGCAGAGACAGCAGGAGCTTTATCATATCTACATTCAGCTGCCTCAGTACCCATTATCCATAGAGATGTCAAGGGTGCCAACATTCTCTTGGATGAAACTTACACTGCCAAAGTGTCTGATTTTGGAGCTTCAAAATTAGTTCCACTTGATCAAACTGACATAGCCACAATGGTGCAGAGAACAATTGGCTACTTAGACCCAGAGTATATGCAAACAAGCCAATTGACTGAGAAAAGTGATGTGTATAACTTTGGAGTAGTGCTTGTGGAGCTACTAACAGGGGAGAAACCTCTTTCTTTTGATAGGCCGGAAGAGAAAAGAAGCCTTGCAATGCACTTTCTATCTTGTTTGAAAAAGGATCGCATGTTTGATGTTCTTCAAGTTGGCATCTTGTGTGAAGAAAATAAGAAGGAGATCAAGGAGGTTGCTATTCTTGCTGCAAAGTGCTTGAGACTTAAAGGGGAGGAAAGGCCTAGCATGAAGGAAGTCGCTATGGAGTTGGAGGGAATAAGGCTAATTGAGAAGCACCCTTGGATCAATACATATGTAAATCTGCAGGAGACTCAGTATTTGCTTCATGAGCCACAATCTAGCAATTATGAACATGGTGATAGTAGCAGCTATCAAAATACTGGGTATGACAGCATCAGGGATCATTCACTAATTGCCTTTAATGATGGAAGATGA 2244 0.4118 MVTLAVAADQALSPEVATPKQTLPAGCNYTCGDVEIPYPFGIGLSSTPDQRPCYLEPKFNLTCVNDSQLLWGNVPVLHIDIQGQMDVLFQVSWHCYKLNGSDYYNYPWMRTATFSISSKENKFLIVGCNSFGYLDSVFEGRKYSTGCLTRCYGNRKGIKNGTCSGIGCCQVDIPPNMRNITIEAFGFRYFPTESLGTCSFSFVVKQGNYTFSTCHLDYFPNATFPLVLDWSVGNMSCNASEGGADYACRENSYCDDEDTDIGYRCRCNQGYEGNPYHPDGCTDIDECKTSNHTCLDIYHCLNTDGFYQCFCPPGQSGNGTKEGRCHRRDVLTKVVIGVGAGFIVLFVATSSLYLIYQKRKLIKQKEKFFQENGGFILLQQLRTREDSSQLRTRDDSSQATQVFTENELKKATNNFDESLIIGKGGYGTVYKGILPDKRIVAIKKSKIVDKSQIEQFINEVVLLSQINHRNVVKLLGCCLEAEVPLLVYEFVSNGTLFDFIHTKRKPNDNVTWKTRLRIAAETAGALSYLHSAASVPIIHRDVKGANILLDETYTAKVSDFGASKLVPLDQTDIATMVQRTIGYLDPEYMQTSQLTEKSDVYNFGVVLVELLTGEKPLSFDRPEEKRSLAMHFLSCLKKDRMFDVLQVGILCEENKKEIKEVAILAAKCLRLKGEERPSMKEVAMELEGIRLIEKHPWINTYVNLQETQYLLHEPQSSNYEHGDSSSYQNTGYDSIRDHSLIAFNDGR. 748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02488 747 FunFam Fibrillin 2 278 322 - -
Seca8g02488 747 ProSiteProfiles Protein kinase domain profile. 415 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02488 747 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 18 699 IPR045274 GO:0007166
Seca8g02488 747 ProSiteProfiles EGF-like domain profile. 283 326 IPR000742 -
Seca8g02488 747 ProSitePatterns Protein kinases ATP-binding region signature. 421 444 IPR017441 GO:0005524
Seca8g02488 747 Pfam Protein kinase domain 419 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02488 747 Gene3D Plasmodium vivax P25 domain 195 331 - -
Seca8g02488 747 ProSitePatterns Calcium-binding EGF-like domain signature. 283 309 IPR018097 GO:0005509
Seca8g02488 747 Gene3D Phosphorylase Kinase; domain 1 377 490 - -
Seca8g02488 747 Pfam Wall-associated receptor kinase galacturonan-binding 27 84 IPR025287 GO:0030247
Seca8g02488 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Seca8g02488 747 Pfam Calcium-binding EGF domain 283 325 IPR001881 GO:0005509
Seca8g02488 747 SUPERFAMILY EGF/Laminin 282 320 - -
Seca8g02488 747 CDD STKc_IRAK 421 689 - -
Seca8g02488 747 SUPERFAMILY Protein kinase-like (PK-like) 395 687 IPR011009 -
Seca8g02488 747 FunFam Wall-associated receptor kinase 2 491 709 - -
Seca8g02488 747 SMART egfca_6 283 326 IPR001881 GO:0005509
Seca8g02488 747 FunFam Wall-associated receptor kinase 2 386 490 - -
Seca8g02488 747 Gene3D Transferase(Phosphotransferase) domain 1 491 703 - -
Seca8g02488 747 CDD EGF_CA 283 317 - -
Seca8g02488 747 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 300 311 IPR000152 -
Seca8g02488 747 SMART serkin_6 415 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02488 Seca-Chr8 54305479 54314267 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02488 27 747 Receptor kinase-like Gene Family AT1G21230 45.034 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca8g02488 Pkinase 2.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02488 - - gmx:106795446 1027.31