Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02486 ATGGATCACCACCACCACCCCCACTTCATCAACCACAACCACCACCACCACCACCACCACCATCACCAACATCAACCCCAACAGCACCGCACAAGATATGCTCCTTTGACTCCTCAATCTCATCATCACCACAACCCTCACGCTCTGCCGCCACCGCCTCCTCCGCCGTCCGCTCTGCCGCCTCCGCCTCCTCTCTCCTACCGCACCATCCACACCCCTCCTCCTCCCCCAACCTACCACAATCCTCCTCCACCTCACCAATCCCAACAATTCCCTCTTTACACCCACCGCCCTATCGAAGAAGAACGCCCTCTCCCAACCACCAACCACCACCTCCACCACACCTTCTCATCCAATCGAAGCCTCCCTGATGACGTCCTCCATCGCCGTGCCCTCCCCGAGTTTGACCACCGCCGCAATCCCAAACCCCACTGGAACCCTAGCCCTGACAATCACCTTCAACGAAATTACCCTCCCCTCGATTACGATCGAGAATTGAACCACCATTATCATCACCGTCCCCCTCCACCGCCACCACCACTGTCTTATCCACCGATTGAAAAGCTTCGGTATGACCCCGAGGTTGGATGCTCCAGATTGAAGACGGAATGCCTCGATGAAAACCCTAGGGAAGGCTTCATCTGGGGAAGCAAAGGTACCAGCGACGGCAGTTACCGCAGCATTCTCGAGGAACCCACTGGTCCGGCGGCCTCGATTGTCGACGCCGACTCAAAATCCGGTGGTTACGTTCGCAGCTATGGTGTGGAATCCGATGCTGACGTGTCCACCAGGGTTGGCAGGGTCCTTAGCAGAAGGTTGGTGATTGATAGAAAGGGACCAAGAGAGTTGCACGATTCTCCTTCTTATGAATTGGTGAACGATGAAATAGGTGCTCCCATGAAACGAGAGTACTACGGTTCTGAAATGGTTAGGTATAATAGTAACAACTGCAGAGGGAACAGCAGGGAGTGTGGTCATGAATTCAATCGCACTCCTCCGAAGAAACAGATCCAGAAGAAGAGTGCACTTCTCAGAATCCAGACGGTAAAACCCAATCACAGGAATCGCGATGTTGAACAGTTACGGTATGCTGGCTATGCTCCTGACTCTGACTCTAATTTCTTCAGGGGTAAGGAGCAACATGGGTATCTAGGTCATGGGATGAAGGCTGAAGAGAGAGAAAGAGAAGGAAGCCCTATGGAGCTTGATATTTCTTTCGAATCAAACTCTCTGGTGGCCAAGGCTATTGTTGCACCTTCAAGTTCGGGTGCTCCAATTTCTGATTCCAATTTGGCTCCGGTTTCTGACTCGCCGTGCAAAACAACTGATACCTCTAGTTCGGGCAAGGAATTGAGCTTGCAGAAGAATGTATTTGATGCTTCTTCTCAGCCTTGTGCTAGTGTGTCTGGTAACCCTCAAGGGAAAAATGAGGTGGCAGTTTCAGTTGAAGTTGCCGATATTGGTTCTGGTAAATCGACCCCTAGGATTATCAAGAAGAAAAAAATTGTTAAAAGAGTGGTGAAGAAAACTGTCACGAACCCTAATTCAACTGTGTCAAGTTCACTATCTGAGAATTTGCAGCATGGAACTGTGCAAGCAGATATTGTCACACTCAGTTCATCAACTACACCTGGTCCTGACAAAACTGAGACTTGTTTGGAGGAGAAAAGCACCACTGTTGACAAGGTGTTTGTGCCAGAAGGGAATGTATTGACTGAAGATAAAAATGAAGATCTATGCCTGCTGAGTTTGGGGCCAGATTGCAGGTCACAAGAATGTAAGACTGATGAAGATTCTGATATTAGGAAAGTATCCAGGTTTGAAAGAGAGGGAAACATTTCAACTTCTCCATCTTGTGCTTCTAGTAGTGAAGATAAAAAGAGTGGTCCTAATTGTTTAGATGCAAATAATTCTGTCCATGACTTGCTTTGCATGCCAAATACTGAAATGGTTACTAATTCATTGAATGGTAGTACTTCTTCTGAAATCAATTGCATGGATTCTAATAATAAGCAATTATGTCAGAATGATGCATCTCTATCACCTGGGAAATATTCAAATATAGGATGCTCAGAGAATAGAAATCTTGTAGATGTAGGGGATGAAATGACTCGCAAATTGTTTAGTTCAGCTGATAGTGTCATTTCCACAGATCTTATAGATGTGCATAATTCTACCGATATCAGGGTTTATGGCTTCAATAACAATGATCTTACAAGTTTAGAAGAGAATTTAATTGCTACTGGCGATGGGAATAATGACACTATTAGTAAGGCATATTATGAAAATATGGCCCCTACAATAACTCAAAATGCTATTTTGGAAGAAAAATCAGATATAGCCACCCCTCTGCGAAGCAGTGAAATTGTTGTATTTTCAAGTTCAGGAAATACTATGATTCAGGATGGTCTAGGTTGCCTACAAAATGTCAATGTACTGAAGTCGGGTTTTGACAATGGATCATCTAATTCAGAATTTGGTATCATGAAAGATGATAATGATGATTCAAATAAGGTTTCACCACATCCTAAAAGGAAAAAATTCACTAGTCATAAAATTTTTACTCAATGTCAATCTGAATTCAATGATGCAATTGTGGCTACCACATCTAATGCGGGAGTTCCTATCAGTTTTAGTGATAACCAAGAACATAAAAAAGAAGAAATTGCATTGTCAAGCATGGGTATTCTGTCAAATGCTAAGTCGAGGCCTTATTCAGAGGATATTGCTAAATTGTCGGACAATATTATGGTTGCAGGGTCTTTTGATTCTATGGATGTAAATAAGGAAGCCATGATTTCTGAGCATTTGGAATTGCAACACTCAGATATTGTCTCAAATTCACTGTGTGAGGGCTTGGCCTTTCCAAATGTTCAGTTCCCAATGTTGGAACCTGAGCAGATAGAAAATATTACTCCAATTGTGCTAGTAAGTAATACTCAAACTGACATTTTGGTTGTTGGAAACATCAAGGATGAAAAGATTGATTTACAGATTGAAGAAAATTACCAGTATAAAGATTTTGTGCGAAGGTCTCCAAGGGCTGATATGGAACCTAATGATCTCAACATGAAGGATGATTTACATACAGACCAAAACCTTATATCCTGCCCAACTGATGGTGATGGAGTCACTACTGGTAATTCAAATGATGAATTGATTGAGGATTCACTTGATGCTTTATCAGATATATGTTCTCAACGGTTGACATCTGAAGTACCGGATAAAAGGAATTTAGAACTTACAACAATCCATGATGAAAACATTTGTGGGGATGAAGAACATTCGAATAACATATCTGTGGTTGAAAATGGTTCTGACTTACATACTTCATCAATACAGAATACTAAAATCATTGTGAAGTCAGAACATGGAATTGGACATGGTAACCCAAAATTGAGGAATATAAGGCTAGAACAGTCCCAAGTTTATTCCAAAGTTACAACTAAGGGTATAAATTCATATTGTTCCGAATTAAATGGGAGCAAAATTCAGCCTGGTGGTGTATTCCATAAAACTTTCCAAGGTCATTCTTACACCTTTTCAAAGTCAAAAACAAAGACATCTGCCTCTTCAACCCACATTTCAAAACCACGAACTTGGCTTCGTACAGGTAATATTCCTCCCACTTCTATACCTAGAGTCAAGCCTTTGACAGGAACAGTTTCTTCCAAAAGGCCTATTCTAGAAAGGAAAGGGAACTTTCAAAATACCTCTTACATTCGTAAAGGTAACAGTCTAGTAAGGAAACCCACTCCAGTTTCTGGTTTACCTCAACTCTCCTCAGCTAATCAATCACCTTTGGACTTAGATGAAATGCAAAAGTGCACCAGATCTGAAAGCAGGGTTGATGTGACATATCAACCAATCTACTTGAGAATAAAAGCAAATGCTCCTCAACAAAGACAGAGAACACCTCCGCTGCCCATTGACACCAAATCAGAGGAAAATATATCTTCCTCATTGGTAGAACCTCCTTCCAGTGGTTGTGATGAAAATGTATCAGATCCTAGGAAATTTAAAGAAACTAATGATGTGCCAAACTCTTCTGAAGATGTGCTGAAGCATTATGAAACTCCTGACAATCAATCCGGTTCATCTAACAATGGGGAGAGCCAAGTTGGAACAAATGATGGAAATATTTCTTCTTTGATCACTAAGAGAATAGTATATATAAAGCCCAAAACAAATAAGTTGGTTGCAACTTCAAATTCTTGTGATGTTATTGTCCCTACTGATGACAAGGGCCAGACAGCCTTCTCCGATGGCTACTACAAGAGGAGCAAAAATCAATTGGTTAGGACTACATTTGAAAGTCATATCAACCAAACAATTGCAATGCCCAATAGCACTATAAATTCTGATGGGCATGGGGCTAGGAAGGTTCTTTGCAATAGGAGGTTTACTAAGAGGCGGACCCATAAGGTTGCTGGGAGTTCATGCAAACCTTCAAGAGCCTCGTTAGTGTGGACACTTTGTAGCAAAAATTCATCTGAAAATCACAGGGACTCATGGAATTATCAAAAGATTTTACCTCACTTGTTTCCATGGAAAAGAGCAACATATTTAAGAAACTTCATTCATAATTCTGCTTCAAGCTGCAATAGTAGTTCCTTATCTGCTATCAGCAAGAAATTGCTTCTGTTGAGAAAGAGGGACACTGTTTACACTAGGTCGACCCATGGGTTTTCTCTTTGGAAATCCAAGGTTTTAGGTGTTGGTGGGTCTAGTTTAAAATGGTCCAAATCCATTGAGAAGCACTCAAAAAAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTTGAGAGGAAGAAGAGAGAGCAGAAAGATGTGGCTTGCATCGGTTCTCAGACAAAGAGAGAACGTATATTTCGTATTGGTTCAGTTCGCTACAGAATGGATCCTTCAAGGCGGACACTTCAGAGGATTTCAGATGATGAATCCCTGTCCTCTACCTCTCCCTGTTCGAGTTTGTCTTCCAAAAAAACTTACATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCGCATTGGCAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAGAAAGTCAGATGGAGCCTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAAATATTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGGAAGGAAGTGTCCTTATATTCATGATCCTTCAAAAATTGCTGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACTCATAAGGTTATTCCAGAGAGAATGCCAGACTGTTCTTATTTTTTGCAAGGTTTATGCTCAAACAGAAATTGCCCATATAGACATGTCAATGTGAACCCTAAGGCATCTGTATGTGAAGGATTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACCCAAGGAACAAAATGCAAGCTTCACCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCTGGAGATCAGAACAGTAGAGGGCGATACTTTGGTTCTATTCCCTCTGATGTTTCTGAACCTGGGATGATGATGGCTCCAAGGCAACGTCAAAAGAAGGATGACCTTGAAAATGAACTTTCCGATTACATCAGTCTTGATGTGAATGAAGAAGTTATAGACACCGTTGATCAATCATTTGAGCAGTCAACATTTTGTGACAATGATTCCTTGGATTTACAGTTGGATACTTCTGATGAACTTATTAAACCAGTTCTTATAATAACAAAATTCACATCACAATCATCTCAGTCCAGTAGCCCGGAAGTTTAG 5877 0.4174 MDHHHHPHFINHNHHHHHHHHHQHQPQQHRTRYAPLTPQSHHHHNPHALPPPPPPPSALPPPPPLSYRTIHTPPPPPTYHNPPPPHQSQQFPLYTHRPIEEERPLPTTNHHLHHTFSSNRSLPDDVLHRRALPEFDHRRNPKPHWNPSPDNHLQRNYPPLDYDRELNHHYHHRPPPPPPPLSYPPIEKLRYDPEVGCSRLKTECLDENPREGFIWGSKGTSDGSYRSILEEPTGPAASIVDADSKSGGYVRSYGVESDADVSTRVGRVLSRRLVIDRKGPRELHDSPSYELVNDEIGAPMKREYYGSEMVRYNSNNCRGNSRECGHEFNRTPPKKQIQKKSALLRIQTVKPNHRNRDVEQLRYAGYAPDSDSNFFRGKEQHGYLGHGMKAEEREREGSPMELDISFESNSLVAKAIVAPSSSGAPISDSNLAPVSDSPCKTTDTSSSGKELSLQKNVFDASSQPCASVSGNPQGKNEVAVSVEVADIGSGKSTPRIIKKKKIVKRVVKKTVTNPNSTVSSSLSENLQHGTVQADIVTLSSSTTPGPDKTETCLEEKSTTVDKVFVPEGNVLTEDKNEDLCLLSLGPDCRSQECKTDEDSDIRKVSRFEREGNISTSPSCASSSEDKKSGPNCLDANNSVHDLLCMPNTEMVTNSLNGSTSSEINCMDSNNKQLCQNDASLSPGKYSNIGCSENRNLVDVGDEMTRKLFSSADSVISTDLIDVHNSTDIRVYGFNNNDLTSLEENLIATGDGNNDTISKAYYENMAPTITQNAILEEKSDIATPLRSSEIVVFSSSGNTMIQDGLGCLQNVNVLKSGFDNGSSNSEFGIMKDDNDDSNKVSPHPKRKKFTSHKIFTQCQSEFNDAIVATTSNAGVPISFSDNQEHKKEEIALSSMGILSNAKSRPYSEDIAKLSDNIMVAGSFDSMDVNKEAMISEHLELQHSDIVSNSLCEGLAFPNVQFPMLEPEQIENITPIVLVSNTQTDILVVGNIKDEKIDLQIEENYQYKDFVRRSPRADMEPNDLNMKDDLHTDQNLISCPTDGDGVTTGNSNDELIEDSLDALSDICSQRLTSEVPDKRNLELTTIHDENICGDEEHSNNISVVENGSDLHTSSIQNTKIIVKSEHGIGHGNPKLRNIRLEQSQVYSKVTTKGINSYCSELNGSKIQPGGVFHKTFQGHSYTFSKSKTKTSASSTHISKPRTWLRTGNIPPTSIPRVKPLTGTVSSKRPILERKGNFQNTSYIRKGNSLVRKPTPVSGLPQLSSANQSPLDLDEMQKCTRSESRVDVTYQPIYLRIKANAPQQRQRTPPLPIDTKSEENISSSLVEPPSSGCDENVSDPRKFKETNDVPNSSEDVLKHYETPDNQSGSSNNGESQVGTNDGNISSLITKRIVYIKPKTNKLVATSNSCDVIVPTDDKGQTAFSDGYYKRSKNQLVRTTFESHINQTIAMPNSTINSDGHGARKVLCNRRFTKRRTHKVAGSSCKPSRASLVWTLCSKNSSENHRDSWNYQKILPHLFPWKRATYLRNFIHNSASSCNSSSLSAISKKLLLLRKRDTVYTRSTHGFSLWKSKVLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVERKKREQKDVACIGSQTKRERIFRIGSVRYRMDPSRRTLQRISDDESLSSTSPCSSLSSKKTYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGRKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASVCEGFLKGYCADGNECRKKHSYVCPTFEATGTCTQGTKCKLHHPKKQSKGKKRKRSGDQNSRGRYFGSIPSDVSEPGMMMAPRQRQKKDDLENELSDYISLDVNEEVIDTVDQSFEQSTFCDNDSLDLQLDTSDELIKPVLIITKFTSQSSQSSSPEV. 1959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02486 1958 ProSiteProfiles Zinc finger C3H1-type profile. 1769 1795 IPR000571 GO:0046872
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1247 1270 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 422 450 - -
Seca8g02486 1958 ProSiteProfiles Zinc finger C3H1-type profile. 1714 1743 IPR000571 GO:0046872
Seca8g02486 1958 Gene3D - 1797 1859 - -
Seca8g02486 1958 FunFam zinc finger CCCH domain-containing protein 3 1744 1795 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 604 631 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 11 30 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 610 631 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1190 1207 - -
Seca8g02486 1958 PANTHER CCCH ZINGC FINGER 325 1944 - -
Seca8g02486 1958 ProSiteProfiles Zinc finger C3H1-type profile. 1796 1823 IPR000571 GO:0046872
Seca8g02486 1958 MobiDBLite consensus disorder prediction 157 172 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1255 1270 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1359 1379 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 45 89 - -
Seca8g02486 1958 SMART c3hfinal6 1769 1794 IPR000571 GO:0046872
Seca8g02486 1958 SMART c3hfinal6 1714 1742 IPR000571 GO:0046872
Seca8g02486 1958 SMART c3hfinal6 1743 1767 IPR000571 GO:0046872
Seca8g02486 1958 SMART c3hfinal6 1823 1845 IPR000571 GO:0046872
Seca8g02486 1958 SMART c3hfinal6 1796 1822 IPR000571 GO:0046872
Seca8g02486 1958 MobiDBLite consensus disorder prediction 36 91 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 123 145 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1298 1328 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1836 1890 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1296 1379 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1839 1858 - -
Seca8g02486 1958 Gene3D - 1741 1796 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 11 28 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1190 1219 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 104 185 - -
Seca8g02486 1958 FunFam Zinc finger CCCH domain-containing protein 7 1797 1858 - -
Seca8g02486 1958 MobiDBLite consensus disorder prediction 1334 1358 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02486 Seca-Chr8 54265204 54275597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02486 1720 1849 C2H2 Transcription Factor Family AT2G32930 32.353 6.40e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g02486 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02486 - - gmx:100802468 1957.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02486 8 54265204 54275597 Seca8g02486 8 54265204 54275597 ECH