Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02485 ATGGGTCGTGCAAGAATAACTTTGAAACGAATCCAAAATGATAGAGCTCGTAAAGTAGCTTTTATGCAAAGACAGAAAGGGCTAATGAAGAAAGTATCTGAATTTACCACTATGTCTGGAGCTGAAGCATGCTTGATCGTGTATGATGATGGCAATTGTAATGCTAGACCAATGACTTTTCCCCAAGACTTAGGAGTGGTACACTCCATCCTCGAAAAGTTTGAGCGTCAAAAGAATGAGAAAGCCCCTAAAAAATTTGACTTAGAAGATTTTTTTGACAATAGGAAGGACATGGTTGAAGCTGAGATTTCCAGAGTTAAGAAAGAGATCCTCAACATCAAGTACCCAACTTGGGATCCAGTATTTTTCAATAACCTCAAAGTGGAGCAATTGAGGGCATTCATTTCTATGTTGGATACTAAGATTGAAGATTGTAACAACCGGATTAACATTCTGAAAAATAAGCAAGTTATCCCTGCACCTGTGGAGCCATTTAATGATAATAGTGGATTGGTGAATTTGATTAATCAATGTAACATACCTTTGGATTCAGCAAACCAACTTGGTGAGCCCATGGGCCCGGGTGATCTATTTGATGGGCTTGAGGATTGGAATAGTCAACTTGCTAAGCTTGATGATTGGGCTGATTGTAATCAACTAGATGGTGATCTTCTTGGGTGGGCCAATCAACCTGATGAATCTTTTTGGCAGAATATTCCATCTCAATCTCAGAGTGAGCAGAAAGGAGCTGCTTCGCTTCCCTTGCCACCGCCTAGTGATGGATTTTAG 789 0.4018 MGRARITLKRIQNDRARKVAFMQRQKGLMKKVSEFTTMSGAEACLIVYDDGNCNARPMTFPQDLGVVHSILEKFERQKNEKAPKKFDLEDFFDNRKDMVEAEISRVKKEILNIKYPTWDPVFFNNLKVEQLRAFISMLDTKIEDCNNRINILKNKQVIPAPVEPFNDNSGLVNLINQCNIPLDSANQLGEPMGPGDLFDGLEDWNSQLAKLDDWADCNQLDGDLLGWANQPDESFWQNIPSQSQSEQKGAASLPLPPPSDGF. 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02485 262 Gene3D - 13 98 IPR036879 GO:0003677|GO:0046983
Seca8g02485 262 Coils Coil 135 155 - -
Seca8g02485 262 PANTHER MADS BOX PROTEIN 3 148 - -
Seca8g02485 262 CDD MADS_SRF_like 2 87 IPR033897 GO:0000981|GO:0000987|GO:0045944
Seca8g02485 262 MobiDBLite consensus disorder prediction 231 262 - -
Seca8g02485 262 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca8g02485 262 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca8g02485 262 ProSiteProfiles MADS-box domain profile. 1 52 IPR002100 GO:0003677|GO:0046983
Seca8g02485 262 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca8g02485 262 SUPERFAMILY SRF-like 1 79 IPR036879 GO:0003677|GO:0046983
Seca8g02485 262 MobiDBLite consensus disorder prediction 231 250 - -
Seca8g02485 262 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02485 Seca-Chr8 54099182 54099970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02485 1 178 Type I MADS-box Gene Family AT5G55690 28.022 3.47e-18 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca8g02485 SRF-TF 2.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02485 - - ccaj:114915062 208.379