Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02479 ATGAGCAAACTAAGAACCCATAGAAACCCCACCACCACTAATAAGCATGGGAACAAAAACCAAAGCCAAACCCAGCCCCAGAAGAAAAAGAAACAACCCTCATGGGCAATGTTGAGAGGCCTATTCACTTGTAAAATTATCCAAGTGCAACAACAGCAAAAGAAGCCACAGCCTGAAAAGAAACAACATCCAAGGCAAAATAAGGAGCAGAAAAAACCTCAACAAGATGAAAGAGATCCTAAAGAAAACATCAAGAAATGCAAGCAAATGAAATGTTCAGGTTTTCTTTGTAACAACACAAAGGTAATGGCAAGGCCTAAAACAAGAATCCCTGATGTGCACAAGAAAAGGGTTTCACTCTCACATAGTGGTGCATCTAACTATAATAATGATGCTTCCACCAGAGCCATTCAACCTCCTCAACAAGAAATCAATGGACTTGTCTCTACCTCTTCCTCTTCTTCATTGTCAGCATATTCTAATTCCTCTCTCAGTGGCTCTTTTAGGGGAATGCCATTCAGAAGACTCTGTGGCTGCAATGAATGTCGAATGGTGGTTGACCCTGTTCTTGGTTTCACCAAAGACCCTTCTCTAAGGGGTACCATTTGTTCTTGCCCTCAATGTGGTGAAATCTTCACGAAAGCTGAAAGCTTGGAACACCATCAAGCTATTAAGCATGCTGTTTCTGAACTAGGTCAACAGGATTCAAGCAAGAACATAGTAGAGATTATATTTCTTTCTAGCTGGCTAAAGAAAAGTTCTCCAATGTGCAAAATTGACCGCATCCTTAAGGTCCACAATAGCCAGAGGACAATTTGCAAATTTGAAGAATACAGAGACTACATCAAAGCCAAAGCCACAAAGCTCACAAAGAAGCACCCTCGTTGCATAGCAGATGGAAACGAGCTACTCATGTTCCACTGCACCTCCTTTGTGTGCCCGCTAGGACTTGGTGGCTCCTCCAACCTCTGCAACTCAACACCAAAATGCATTGTCTGCGAAATAATCAAGAACGGTTTCAAGGCCACAGGGGAATCCAATGATGGAAAGGGGATATTGACAACGACAACAAGTGGGAGAGCACATGACAAAGCAGGGGTTGAGAGTAATGAGAAGAAAGCAATGTTAGTTTGCAGGGTGATAGCAGGGAGGGTGAAGAAGAATAATAATAGTCCAGAAGGTGGTGGTGGTGACGACATCGTTGAGGAGTATGATTCAGTTGCTGGTGATGTTGTTGGGGTTTATTCAAATTTGGATGAGTTGTATGTTTTCAACAATAGTGCTATTTTGCCTTGCTTTGTTGTAATCTATACCCTATAG 1320 0.422 MSKLRTHRNPTTTNKHGNKNQSQTQPQKKKKQPSWAMLRGLFTCKIIQVQQQQKKPQPEKKQHPRQNKEQKKPQQDERDPKENIKKCKQMKCSGFLCNNTKVMARPKTRIPDVHKKRVSLSHSGASNYNNDASTRAIQPPQQEINGLVSTSSSSSLSAYSNSSLSGSFRGMPFRRLCGCNECRMVVDPVLGFTKDPSLRGTICSCPQCGEIFTKAESLEHHQAIKHAVSELGQQDSSKNIVEIIFLSSWLKKSSPMCKIDRILKVHNSQRTICKFEEYRDYIKAKATKLTKKHPRCIADGNELLMFHCTSFVCPLGLGGSSNLCNSTPKCIVCEIIKNGFKATGESNDGKGILTTTTSGRAHDKAGVESNEKKAMLVCRVIAGRVKKNNNSPEGGGGDDIVEEYDSVAGDVVGVYSNLDELYVFNNSAILPCFVVIYTL. 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02479 439 MobiDBLite consensus disorder prediction 1 85 - -
Seca8g02479 439 SUPERFAMILY ADP-ribosylation 228 438 - -
Seca8g02479 439 MobiDBLite consensus disorder prediction 56 85 - -
Seca8g02479 439 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 39 437 - -
Seca8g02479 439 ProSiteProfiles Zinc finger C2H2 type domain profile. 203 231 IPR013087 -
Seca8g02479 439 ProSitePatterns Zinc finger C2H2 type domain signature. 203 226 IPR013087 -
Seca8g02479 439 Gene3D - 227 438 - -
Seca8g02479 439 MobiDBLite consensus disorder prediction 13 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02479 Seca-Chr8 53877419 53879017 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02479 2 437 C2H2 Transcription Factor Family AT1G75710 40.652 2.99e-93 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca8g02479 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02479 - - cave:132168016 538.88