Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02478 ATGAAAATGCTGCAAACCGTCACTGCCGGAGATGCCACCGACGGTGTCTCCGGTGGCCGGACGGTGGTGGTGGGTGTGAAGATGGAATCTCATAGCAGAGAGTTGCTTACTTGGGCATTGGTTAAAGTTGCTCAGCCTGGTGATGTTGTTGTTGCTCTTCATGTTCTTGGGAATGATGAAATTGTGAATCGAGATGGGAAATCGTCTCTGTTTTCGCTTGTTAAAGCATTTGACTCTGTTCTTGCTGTTTATGAAGGATTCTGCAATTTGAAACAGGTGGATCTCAAGCTAAAAATTTGCCGTGGTTCATCAGTGAGGAAGATTCTGGTTCGAGAAGCAAATTCTTATTCAGCAACTCATGTTATAGTTGGAAGTCCTCAAGGTCTTAATAAAATTCGGCCATCAATTTCTGTAGCTAGATACTGTGCTAAGAAGTTATCCAAGGATTGTTGGGTTCTTGCTGTTAACAATGGCAAAGTTGTGTTCAAGAGAGATGGCTCACCATCAACTCGTGCTGACTTAAAAGGAAATGATCAGGATCAGAGAAATGGGTTACTCGGTTCAATTAACTGGACATTCAGCAAGAGTTCAAAAGTACTAAATGATGATGACACTGCAGAGATGCAAGAAAAGGGTAGTGGAAAATATTCAGATCACAGCTTAGCTAAGGTTTTTATGGATTCTACAGAAGACATTGGGAAGAAGAGCTGCTTCATTTGTGCTTTCACTCCAGCATTGCCAGATTCATCATGCCACCAATCTGCAGAAAAGTTTTCTGGTAATAGTGAGAACTCTTTGGCTATAGTGCCTGCACAAGCCACTGATGCTGGTTCTAGCAGGATAAATTTGCATGGTAGAGAAGTAACTGAATTGAAACCTGGTTGGCCATTACTGCATAGAACAAAATTATTAGATAGGCAATCTAGTGAAAGATCATCCTTGCGCCAGATCTCTGTGGTCCAGTGGGCAATGAGGTTGCCCTCTAGAAATCTTTCATATGGTTCAAATCATAACCATAAAACAAACAATTGTGCACAATATAAAGATCAATTTCTTGATCTAGATAGCAAAAGTGGTGCTCTTGTTCCAGTGGATGCTGAAATAGGGATTGCTGCTTCACCTGAACGTAATTCAAGTAGTAGCATTCCTAAAGAATTGGAGGGCCTTCATGAAAAATACTCATCCACTTGCAGATTGTTTAAGTACCAAGAACTTCTATCAGCAACATCAAATTTCTTGCCTGAAAATTTGATTGGGAAAGGAGGAAGTAGTCAGGTTTATAGAGGCTGTCTTCCTGATGGCAAGGAGCTTGCTGTTAAGATCTTAAAGCCTTCTGATGATGTTCTGAAGGAGTTTGTTCTAGAAATAGAAATTATCACTACTTTGCATCATAAAAACATTATTTCTCTACTGGGGTTCTGCTTTGAGGATGGCAATCTTCTTTTGGTCTATGATTTCCTATCTAGAGGAAGCCTTGAAGAGAACCTTCATGGTAATAAGAAAAATCCACTTGTGTTTGGTTGGACTGAGAGATTTAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGAGTATCTGCATAATAATGATGGACAACCTGTGATCCATCGGGATGTGAAATCATCAAATATATTATTATCTGAGGATTTTGAACCTCAGCTTTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCATCATCACATATAACCTGCACAGATGTTGCTGGAACCTTTGGTTACATGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGACAAGGTTGATGTCTATGCATTTGGTGTTGTGCTCCTTGAGCTTCTCTCAGGGAGAAAGCCCATAAGTGGTGATTATCCCAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAGTCCAATTCTAAATAGTGGGAAGGTGTCACAATTGTTAGATCCTAGTTTGGGTAATACGTATGATCATGAAGAGATGGAAAGGATGGCCCTAGCAGCAACACTTTGTATCAGACGTGCTCCAAGAGCTAGGCCTCAAATGAGCCTTATTTCAAAGCTCCTTGGTGGTGATGCTGATGTGATCAAGTGGGCAAGGCTAGAAGTTAATGCTTTAAAAGCACCAGATATGCTTGATGATGAAGCTTGTCCACCTTCAAATCTACAGTCACATCTTAATCTAGCACTGCTTGATGTGGAGGATGACTCGCTCTCCATGTGCAGTGTTGAGCAGAATGTCTCATTGGAGGACTACTTGAGAGGAAGGTGGAGCCGCTCCTCAAGCTTTGATTGA 2277 0.4146 MKMLQTVTAGDATDGVSGGRTVVVGVKMESHSRELLTWALVKVAQPGDVVVALHVLGNDEIVNRDGKSSLFSLVKAFDSVLAVYEGFCNLKQVDLKLKICRGSSVRKILVREANSYSATHVIVGSPQGLNKIRPSISVARYCAKKLSKDCWVLAVNNGKVVFKRDGSPSTRADLKGNDQDQRNGLLGSINWTFSKSSKVLNDDDTAEMQEKGSGKYSDHSLAKVFMDSTEDIGKKSCFICAFTPALPDSSCHQSAEKFSGNSENSLAIVPAQATDAGSSRINLHGREVTELKPGWPLLHRTKLLDRQSSERSSLRQISVVQWAMRLPSRNLSYGSNHNHKTNNCAQYKDQFLDLDSKSGALVPVDAEIGIAASPERNSSSSIPKELEGLHEKYSSTCRLFKYQELLSATSNFLPENLIGKGGSSQVYRGCLPDGKELAVKILKPSDDVLKEFVLEIEIITTLHHKNIISLLGFCFEDGNLLLVYDFLSRGSLEENLHGNKKNPLVFGWTERFKVAMGVAEALEYLHNNDGQPVIHRDVKSSNILLSEDFEPQLSDFGLAKWASTSSSHITCTDVAGTFGYMAPEYFMYGKVNDKVDVYAFGVVLLELLSGRKPISGDYPKGQESLVMWASPILNSGKVSQLLDPSLGNTYDHEEMERMALAATLCIRRAPRARPQMSLISKLLGGDADVIKWARLEVNALKAPDMLDDEACPPSNLQSHLNLALLDVEDDSLSMCSVEQNVSLEDYLRGRWSRSSSFD. 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02478 758 SMART serkin_6 412 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02478 758 Gene3D Phosphorylase Kinase; domain 1 376 486 - -
Seca8g02478 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 533 545 IPR008271 GO:0004672|GO:0006468
Seca8g02478 758 FunFam Putative receptor-like serine/threonine-protein kinase 487 699 - -
Seca8g02478 758 PANTHER OS08G0249100 PROTEIN 231 694 IPR046958 -
Seca8g02478 758 Pfam Protein kinase domain 416 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02478 758 ProSiteProfiles Protein kinase domain profile. 412 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02478 758 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 381 486 - -
Seca8g02478 758 CDD USP_Like 21 152 - -
Seca8g02478 758 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 19 156 - -
Seca8g02478 758 Pfam Universal stress protein family 20 152 IPR006016 -
Seca8g02478 758 ProSitePatterns Protein kinases ATP-binding region signature. 418 440 IPR017441 GO:0005524
Seca8g02478 758 SUPERFAMILY Protein kinase-like (PK-like) 393 681 IPR011009 -
Seca8g02478 758 Gene3D Transferase(Phosphotransferase) domain 1 487 691 - -
Seca8g02478 758 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 152 - -
Seca8g02478 758 Gene3D HUPs 19 157 IPR014729 -
Seca8g02478 758 CDD STKc_IRAK 418 677 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02478 Seca-Chr8 53752436 53756630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02478 399 679 Trihelix Transcription Factor Family AT1G68690 46.503 2.01e-76 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Seca8g02478 Pkinase 8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02478 - - pcin:129303222 1127.08