Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02476 ATGGGAAGGGGTAAGATCGAGATCAAGAGGATCGAGAACTCAAGCAACAGGCAAGTTACTTATTCAAAGAGAAAGAATGGGATCCTAAAGAAAGCGAAGGAAATCACTGTTCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGCTGCTTCTGGAAAGATGCATGACTACATAAGCCCTTCTACCACGTTGATTGACATTTTGGAGAGATACCACAAAACCTCTGGGAAGAGGCTCTGGGACGCCAAGCATGAGAACCTAAACGGCGAAATTGAGAGACTCAAGAAAGAGAATGACAGCATGCAAATTGAGCTCAGGTATATAACAATTAATATTACATGTAGCCTTATATATCAATACCTTTTATATCAATTCACGTTTCAAACGTAA 390 0.3974 MGRGKIEIKRIENSSNRQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAASGKMHDYISPSTTLIDILERYHKTSGKRLWDAKHENLNGEIERLKKENDSMQIELRYITINITCSLIYQYLLYQFTFQT. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02476 129 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca8g02476 129 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Seca8g02476 129 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca8g02476 129 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca8g02476 129 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca8g02476 129 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Seca8g02476 129 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 105 - -
Seca8g02476 129 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca8g02476 129 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Seca8g02476 129 Coils Coil 77 111 - -
Seca8g02476 129 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Seca8g02476 129 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02476 Seca-Chr8 53598036 53599450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02476 1 108 MADS-box Gene Family AT5G20240 70.370 6.91e-54 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Seca8g02476 SRF-TF 3.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02476 K09264 - gmx:100817554 215.312