Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02475 ATGGAGGAGGATATGGAAATTGATCATATTGTGGATGTTCCTGATACCCCAGATAGATTAAATGCTGGGCATGATAATCGGAAATATGTAGGTAATCCTGAGAAGAGGGAGAGGACTTTTTCTGCTGCTAATGAAATGAGTAACTGCAGCAACTACATAACAGTGTCCCCATCAGACAAATCCCATCCTTCTAAAAATGCTCCCATCTTTAGGAGAGCTCAAACTGAGAAATTTTCTGGTCTGGGCACAACACACTCTAATGGAACTGAAAGGATGGAGAAAGGGAAAGCTATAAGCTCTAAGTTTCCTTCTAAATCATCTCACCATGGACCTATTTCTATGTTAGATTTGACGGGAGAGAATAGACAGTTCCAACAATGGAAACCAACTTTCTCACATCGTGGATCAAGAGATAATGCAACTGAAAACAAGAAGGTACCAAAATCAAGTATTGGGAACTCTTCATTACCTTTCATCACTGATTCTTCTAACACATCTAGTAATGCCTTCACTGGAAAATATAAACTAGATGACAAAACACTTCCAGGTCCTAATATAGCTATGGACCGTGGCAAGAGCATTTCTCTGTCTAATGATTCTCATTCTCAATCAAAAACTGAAAAGCAAGTGTCTTTGCCTCCTTGTGTTTCCACCACTCCAAGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCACCACAGAATATTGCAACAAGGGCAAAACAATCAGTTGAACAGAGCAGCCTTCAAACCAATTATGTTGAACAGAACCATTCTGGGCATTCAGTTTCTAGCAATGCAATGTCACCAATTAGTATTGATGATATAGTTTCTGAAGAGAGAGATAGTGGTAGAAGGAAGGGAAAGGAAGTACTTATTCATCCTTCATCACATGGACTGAATGCTGGAACTATTCACACCACTAGCAGCCTAATGATCAATCATGAAGATGCCAATGTTACTCGTAATGCTATAAGAAACCCTGAGGGACAAGGTGGTTGGAGAACTACACATAATGAGAAGAATGCTGATCAACACTTGTATGATGTAAATGGGCATCATTCAAGGAGAAATTATGATTCTGGAAGATTTATTAACAGACAGAATATGAACAGAATGGGCAGAAAAGACACTGGGAGCAGTCAAAATGGTGAGGATGCTCATGCTTCTCTATTAGATCATACACCTCGACCAACTTTGCTGATCATTCCGGAGGAAGACCAGTCAACTAGACCTCGTCCTCCTGCTGACACACTGACTAAAAGGCAAAGGAAACGTGGTTCAACTTCGGGAAATCCTAATGAGGCATCTCATAATACTGAAATTATGTTCCTCAATTCATCTGGAGAGTCATCAGGCTCATCGCGAAACCGTGTCTTGGATCCAGAAGTGGTTGAGTTGTTATCCACACCAAGGTACATCAACAGAATTTCTGAAGATTTAGATGACAATGACAATAATAGCTTGGATGCTCGGGCAAGACAAGTAGAAGCAGATGAGATATTGGCACGTGAGCTCCAAGAACAACTTTATCATGATGATTTTTCTGAAGGCAGAGGGTTTGATGAACATTTAGCCTGGGAGCTGCAGCATGCAGAGGATCTTGGGCATACATCTAATGATAGTCACCATATATCTCATCCTACATGGTTTCCAAGGGCAAATAGACAGCCCCGTTCACGGACTCATCAAAATCCATCAAATAGGAGGAGAACTGTGCCTCAAGTTCCTTTCTCTAATAGAATGTCACAGTTGAGGAGTCGCATCGGCATTGCAAGTCGGACTCGGTCATCAACTCCTGTCATGGCATCTAGAGGAAGACGCCCCCGGTTTCCTCTGGATATGGACTTAGACATGAGACTCGACATACTGGAAGCATTAGAGGATGCAGTAGGGGATCTTAATGATATGGGAATGACTGATGACATCTTTCATGCTCACCGTGATTTCAATGAAGATGATTATGAAATGTTATTAGCCCTTGATGAGCAAAATCACCAGCATACTGGTGCAACTGCCAATCAGATCAATAGTTTGCCACAGTCCACCATCCAGACTGACAACTTCACAGAGGCATGTGCCATATGTCTTGAGACCCCAGTCAAGGGAGAAATTATTCGCCACCTTCCTTGTTTGCACAAATTTCACAAAGATTGCATTGATCCTTGGCTCCGTAGGAAAACTTCATGCCCCGTGTGCAAGTCTTCTATCACCTAA 2226 0.4196 MEEDMEIDHIVDVPDTPDRLNAGHDNRKYVGNPEKRERTFSAANEMSNCSNYITVSPSDKSHPSKNAPIFRRAQTEKFSGLGTTHSNGTERMEKGKAISSKFPSKSSHHGPISMLDLTGENRQFQQWKPTFSHRGSRDNATENKKVPKSSIGNSSLPFITDSSNTSSNAFTGKYKLDDKTLPGPNIAMDRGKSISLSNDSHSQSKTEKQVSLPPCVSTTPRGRGHKRLVRNGCISPQNIATRAKQSVEQSSLQTNYVEQNHSGHSVSSNAMSPISIDDIVSEERDSGRRKGKEVLIHPSSHGLNAGTIHTTSSLMINHEDANVTRNAIRNPEGQGGWRTTHNEKNADQHLYDVNGHHSRRNYDSGRFINRQNMNRMGRKDTGSSQNGEDAHASLLDHTPRPTLLIIPEEDQSTRPRPPADTLTKRQRKRGSTSGNPNEASHNTEIMFLNSSGESSGSSRNRVLDPEVVELLSTPRYINRISEDLDDNDNNSLDARARQVEADEILARELQEQLYHDDFSEGRGFDEHLAWELQHAEDLGHTSNDSHHISHPTWFPRANRQPRSRTHQNPSNRRRTVPQVPFSNRMSQLRSRIGIASRTRSSTPVMASRGRRPRFPLDMDLDMRLDILEALEDAVGDLNDMGMTDDIFHAHRDFNEDDYEMLLALDEQNHQHTGATANQINSLPQSTIQTDNFTEACAICLETPVKGEIIRHLPCLHKFHKDCIDPWLRRKTSCPVCKSSIT. 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02475 741 CDD RING-H2_PA-TM-RING 696 737 - -
Seca8g02475 741 PANTHER SI:CH211-59O9.10 236 741 - -
Seca8g02475 741 MobiDBLite consensus disorder prediction 145 173 - -
Seca8g02475 741 ProSiteProfiles Zinc finger RING-type profile. 696 737 IPR001841 -
Seca8g02475 741 FunFam RING/U-box superfamily protein 661 741 - -
Seca8g02475 741 MobiDBLite consensus disorder prediction 191 216 - -
Seca8g02475 741 MobiDBLite consensus disorder prediction 556 578 - -
Seca8g02475 741 MobiDBLite consensus disorder prediction 10 31 - -
Seca8g02475 741 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 741 IPR013083 -
Seca8g02475 741 MobiDBLite consensus disorder prediction 1 31 - -
Seca8g02475 741 MobiDBLite consensus disorder prediction 365 391 - -
Seca8g02475 741 MobiDBLite consensus disorder prediction 353 443 - -
Seca8g02475 741 MobiDBLite consensus disorder prediction 130 226 - -
Seca8g02475 741 MobiDBLite consensus disorder prediction 428 443 - -
Seca8g02475 741 Pfam Ring finger domain 695 737 IPR001841 -
Seca8g02475 741 MobiDBLite consensus disorder prediction 540 578 - -
Seca8g02475 741 SMART ring_2 696 736 IPR001841 -
Seca8g02475 741 SUPERFAMILY RING/U-box 695 740 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02475 Seca-Chr8 53547084 53553946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02475 439 741 C3H Transcription Factor Family AT1G04790 44.860 9.43e-65 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02475 - - aprc:113872307 1097.8