Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02470 ATGTTGAAGACGAAGGTTTTCCAAGGCGCGAACGTGTTCATGTCGCGAAACCTGGTGCCGCCCGAAGTGTTCGACGCGCTCCAAGACGCCGTTAAAGATAACGGCGCCCAAATTCACCTTTGCTGCGATCCTTCCCGCAATGGCCCCAATGATTACCATATCATTTCTTGCAGTAAACACGAGAAGTTTGAGGATCTTAAATCCAAGGGCTGTAAATTGCTCGGTCCTAGATGTGTTCTTTCATGTGCTAAAGAACGAAGACCTCTGCCTAAACAAAGCTTCACTTGTTGTCTTGCAATGGATGGTGTCAAAGTACTTGCCTCTGGCTTTGATGCGGATGAGAAGGTTAAGATAGAAGAGTTGGTGACTGAAATGGGGGGAGTTCTACACACTAAAGCGTCACTGGATTTGAACTTTGTTGTTGTGAAAAATGTTTTAGCTGCAAAGTACAAGTGGGCTTTGAATATCCTGAAGAAACCAATAGTTACTTATGAATGGTTAAAGCAATGCTCAAACGAGCATCGTGTTGTTCCTCAAGAGTCATACAAGGTCCTTCCTTTCTCTGGGTTGAAGATTTGTGTAACAGGAATCCCTGCAGATAAGCGCAAAGAGATGGAAAAGCTTATTTTACAAAATGGTGGGAAATACTCTGCGGAACTGATAAAAAAGTGCACACATTTGATTGATATTTGTGTTCTTGACTGTTCTTACGCTCCTGAAGGTGACAAATATAAGGTGGCAAAACGTTGGGGCCACATCCATATTGTGACTACAAAATGGTTTGATCAATCTATTGCTCGAAGAGCATGTCTGAATGAGGAATCCTACCCTGTTCAAAATGGATCTGTATCTTCACATAAAGTAACTAGGGACTCAACAGTGCAACATAGCCAAGAAAAAGATGAGTGTATGGATAGAGATCTAGAAGCTACACAAACCTCTGTTTCAAATATTCCTTTATCTGTTAAAGAGGCAGATGCTGAAGCACCTCCATTACCTTCCAGCAATGAATTGAACTTTGATGGTGCTGTTGCCTATGATTCTGAGTCTTATGATAATGACCTGTACTTATCAGAATGCAGAATATTACTTGTTGGCTTTGAAGCTTCTCAAATGCGAAAATTAGTTAATATGGTGCGTAAAGGTGGAGGCTCCCGATATATGTCTTTTAATGACAAGTTGACACACATAGTTATTGGGAATCCTACAGAAACGGAAAAGAAGGATGTAAGGAGTCTTGCTGCATTGGGTGTCATTTATGTTGTTAAAACCTCATGGCTTGAAGATTGTGACCGTGAAAAGAAACAAGTCCCTGTTCATCGGAGACACATTGCAAATGATCTACTTCTTCCAAAAGCTAGCTTAGTAAAAGGAGCAGTAACAGGCATTATGTCCATGGATCAAGGTAAAAGCTCTGGCTTTCATCAAATCTTGAAGACTGATCAGGTGGTGGGTATTATAAACTCTAGAGTTGTAATGCCGGAATCCTTGGAGAAAACTAAAGGAGAAAAATCAGATATGGATATAAGTGTTCTCACATTCGGTAAAGCAAAGGGCAGAACAATGCTGCAAAACCAACTTCCTGATAATAAATTGAGGGTACAAAAGATGACACAGCATGACTCCAGTGTTCAACATGTGAAGCCAACAAATGTTTTTAGAGGGAAAACATTTTGTTTCTCAAATTTATTTCCTGAAGAAAGGAGAGCTGAGATTGTTCAGTGGATAATTCAAGGGGGAGGAAAGATAATAAATGGGCAAACAAAACAGAGTGTCCACTATACTATTGAGTGTCATGGTGTAACACCCAGGTTGACAGGTGATTGTGAAAGTACGCATATTTCCAGTCACTGGATACGGTCTTGTTTGGAGGATGGGTCCCTGCTGGATGTTCACAGTCACATCCTTTATTCTCCACTTCCTTGCCATGTTCCCTTGCCTGGGTTTGAAAGTTTCCGGTTTTGTGTTTCACAATATGAGGAGAAAGACAGAATTCTACTCAGGAACTTGTGTTTTGTTCTTGGAGCTAAATTTGTGGAAAAGTTGACTAAGAAGGTCACCCATTTATTGTGTAAATTCACCAATGGGCCCAAGTATGAGGCTGCTTGTAAGTGGGGGATCCGATCAGTTACATCTGAATGGATATTTGAATGTGTCAAACAGAATGGAGTTGTTGCCATTGATCGATTTTTACCCAAAGAAGTGACTGCTCAAGACCAAGAGGCAGGACTTTGCACCGTGAGTCAATTTCCTACCCAGGCTGTTCAAATGATTAGTGACATGCCCTCCCAGTTTCCAAGTCAATCACAAAATTTGGTGAACACGACAAATAAAAATGTAGGTGGTGAAATGGAGAATAATCATGCAACTGATTCTAAACTATCAAATATTTATAGCAAAAAGGCAAGGCTTGTGGACGAACCTGGCCTGTATGATAAGGTGCCTTCAGTAAATTTAGGTACTCATGTCTATGACATGAACTTTTCTAAAGACAATATGCTTAAAGATACTGGGGAGGTTTCTCATGCTGTTCCCGATGTTGCTGCTGCAATCGAGGACTTGTTAGAGCAGACAAGTAAGATGCATGATCAGAGGTCCCCAGGGAATACCGGCTGTCAGAGAAGTATATACTCATCTGATTGTTCGGTCCTTGGTAAAGACAATTCAAATCCTCATACTGTCTTTGGGTTATCTAAACACTGTTTAAACAGAAGTGGCAGAAAAGATGATAATGGTGAGGCTTCTGAAGACAGAAGTGCAGCAACATATTATGGTTTTAGTGAAACACAGACAGAATCTCAGGTTGTTAGTTATGAAGAAGATTTGTCAGGAAGGCAAATGCTTATAGATAGAGTTCGAATTCGAAGTAGCATGCAATGA 2880 0.4073 MLKTKVFQGANVFMSRNLVPPEVFDALQDAVKDNGAQIHLCCDPSRNGPNDYHIISCSKHEKFEDLKSKGCKLLGPRCVLSCAKERRPLPKQSFTCCLAMDGVKVLASGFDADEKVKIEELVTEMGGVLHTKASLDLNFVVVKNVLAAKYKWALNILKKPIVTYEWLKQCSNEHRVVPQESYKVLPFSGLKICVTGIPADKRKEMEKLILQNGGKYSAELIKKCTHLIDICVLDCSYAPEGDKYKVAKRWGHIHIVTTKWFDQSIARRACLNEESYPVQNGSVSSHKVTRDSTVQHSQEKDECMDRDLEATQTSVSNIPLSVKEADAEAPPLPSSNELNFDGAVAYDSESYDNDLYLSECRILLVGFEASQMRKLVNMVRKGGGSRYMSFNDKLTHIVIGNPTETEKKDVRSLAALGVIYVVKTSWLEDCDREKKQVPVHRRHIANDLLLPKASLVKGAVTGIMSMDQGKSSGFHQILKTDQVVGIINSRVVMPESLEKTKGEKSDMDISVLTFGKAKGRTMLQNQLPDNKLRVQKMTQHDSSVQHVKPTNVFRGKTFCFSNLFPEERRAEIVQWIIQGGGKIINGQTKQSVHYTIECHGVTPRLTGDCESTHISSHWIRSCLEDGSLLDVHSHILYSPLPCHVPLPGFESFRFCVSQYEEKDRILLRNLCFVLGAKFVEKLTKKVTHLLCKFTNGPKYEAACKWGIRSVTSEWIFECVKQNGVVAIDRFLPKEVTAQDQEAGLCTVSQFPTQAVQMISDMPSQFPSQSQNLVNTTNKNVGGEMENNHATDSKLSNIYSKKARLVDEPGLYDKVPSVNLGTHVYDMNFSKDNMLKDTGEVSHAVPDVAAAIEDLLEQTSKMHDQRSPGNTGCQRSIYSSDCSVLGKDNSNPHTVFGLSKHCLNRSGRKDDNGEASEDRSAATYYGFSETQTESQVVSYEEDLSGRQMLIDRVRIRSSMQ. 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02470 959 SUPERFAMILY BRCT domain 186 279 IPR036420 -
Seca8g02470 959 FunFam DNA topoisomerase II binding protein 1 187 286 - -
Seca8g02470 959 Gene3D BRCT domain 98 185 IPR036420 -
Seca8g02470 959 Gene3D BRCT domain 546 642 IPR036420 -
Seca8g02470 959 ProSiteProfiles BRCT domain profile. 100 184 IPR001357 -
Seca8g02470 959 Pfam twin BRCT domain 190 260 IPR001357 -
Seca8g02470 959 Pfam twin BRCT domain 653 714 IPR001357 -
Seca8g02470 959 FunFam Transcription coactivator 334 444 - -
Seca8g02470 959 SMART BRCT_7 550 626 IPR001357 -
Seca8g02470 959 SMART BRCT_7 184 268 IPR001357 -
Seca8g02470 959 SMART BRCT_7 4 86 IPR001357 -
Seca8g02470 959 SMART BRCT_7 646 722 IPR001357 -
Seca8g02470 959 SMART BRCT_7 97 174 IPR001357 -
Seca8g02470 959 SMART BRCT_7 354 434 IPR001357 -
Seca8g02470 959 MobiDBLite consensus disorder prediction 905 926 - -
Seca8g02470 959 ProSiteProfiles BRCT domain profile. 548 636 IPR001357 -
Seca8g02470 959 CDD BRCT 103 170 - -
Seca8g02470 959 Gene3D BRCT domain 32 94 IPR036420 -
Seca8g02470 959 SUPERFAMILY BRCT domain 614 733 IPR036420 -
Seca8g02470 959 SUPERFAMILY BRCT domain 351 439 IPR036420 -
Seca8g02470 959 Pfam BRCT domain, a BRCA1 C-terminus domain 550 633 IPR001357 -
Seca8g02470 959 FunFam Transcription coactivator 97 185 - -
Seca8g02470 959 Gene3D BRCT domain 344 443 IPR036420 -
Seca8g02470 959 ProSiteProfiles BRCT domain profile. 352 444 IPR001357 -
Seca8g02470 959 SUPERFAMILY BRCT domain 550 638 IPR036420 -
Seca8g02470 959 SUPERFAMILY BRCT domain 59 183 IPR036420 -
Seca8g02470 959 Gene3D BRCT domain 643 736 IPR036420 -
Seca8g02470 959 Pfam BRCA1 C Terminus (BRCT) domain 354 430 IPR001357 -
Seca8g02470 959 Pfam BRCA1 C Terminus (BRCT) domain 100 170 IPR001357 -
Seca8g02470 959 ProSiteProfiles BRCT domain profile. 649 732 IPR001357 -
Seca8g02470 959 PANTHER DNA REPLICATION REGULATOR DPB11-RELATED 8 957 - -
Seca8g02470 959 MobiDBLite consensus disorder prediction 278 305 - -
Seca8g02470 959 ProSiteProfiles BRCT domain profile. 182 278 IPR001357 -
Seca8g02470 959 CDD BRCT_TopBP1_rpt2_like 647 722 - -
Seca8g02470 959 Gene3D BRCT domain 186 279 IPR036420 -
Seca8g02470 959 ProSiteProfiles BRCT domain profile. 2 96 IPR001357 -
Seca8g02470 959 FunFam Transcription coactivator 545 642 - -
Seca8g02470 959 CDD BRCT_TopBP1_rpt2_like 186 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02470 Seca-Chr8 53242925 53261712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02470 1 958 Core DNA Replication Machinery Family AT1G77320 50.541 0.0 933
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02470 K10728 - gmx:100804966 1422.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02470 8 53242925 53261712 Seca8g02470 8 53242925 53261712 ECH