Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02460 ATGGATAAGCAATTGATTCTCCTCTCCCTCCTCATGTCCCTCTTCACCAATTCCATATCTAATGCTGCATCTTCCTCATGTCCCATGGATCTCAGCTACGTTGAGACCTTTCCTTGGGAAACATCAACCTGCAGAGATCCAATTGATACACAGCAATGTTGCCAAGCCCTTCTCAGCCTATTTGGCATAGGGCTTGCCCAGCACCTCAAAGAAACTTCTCTGTTTCAACTTCCTGATAAAAACACTTCCTCCACTTGCTTATCTGATTTCAAAGTCAAGCTTGCAGCTTTATCAATCCAACCTTCTTTGGTCCATTCTTGCTTCCCTAACTCTGCCCAATTTGTTACTAACTCTTCCAATTGTGCAGGAATAAAAACTGTTCAAGATTGGAAACAAAAGGTTGGCATAATGAACCCATTAGACAGGTATTGTGATGGGGACCTGAAAGATCAAACTAATTGCAATATTTGCACTGATGCTGGTTTTAGAGTGACTTCCCAGCTGAATAGTATTGACCCAAATGCCACAAAATGTTTTTACTTCACCATCTTATATGCTGCAGCTGTTGTTAATCCATTTGGTACAACAGATGTAAGTGCAACTAGTTGCATACTAGGCCTGCAATTGTCTAGTGCAGCAGCATCAAAAGGGTCATCAAATAGAGAACAAGGTTTGACTCTGAAGCTAGTTTTTGCCTTATTGGGTGCTGTAATTGGTGTTCTGCTTGCTTTTGTACTCGTAATCATGTACAGGAAGTGGGATAAGAGAAGGAAGGAAGATCTTTATCACAGGAATATTGAAAACAATGTCAAGGATAGTGTTTTGCCTAATGCTGGTGCAAAATGGTTTCATATATCAGAGCTTGAAAAGGCAACAAATAAATTTTCAGAAAGGAATGTGATTGGTCAAGGTGGTGATGGGATTGTGTACAAAGGGACTCTTTCAGATGGCACTATGGTGGCAGTTAAGGAAATATTCAATTTGGAAACTAAAGGGGATGAAGAGTTCTGCTATGAAGTGGAGATCATTAGCAAAATAAAGCACAGGAATCTTGTTTCTATTAGGGGTTGTTGTGTTTCAAGTGATAATTTAAAAGGTAAGAGGAGGTTTCTAGTTTATGATTTTATACCTAATGGGAACCTCAGTTACCAATTATCTCTTGTTGGGGCTAATAGGCTAACTTGGCCACAGAGAAAAAACATAATCCTTGATGTGGCTAAGGGGCTTGCTTATTTGCACTATGAAATCAAACCCCCAATTTATCACCGTGACATAAAGGCTACTAACATACTTTTGGATTCCAAAATGAGTGCTAAATTGGCAGATTTTGGGTTGGCAAAGCAAGGTAATGAAGGGCAGTCTCATCTCACAACAAGGGTTGCTGGCACATATGGTTATGTGGCACCAGAGTATGCTCTATATGGGCAACTAACAGAGAAAAGTGATGTCTATAGTTTTGGTATTGTGATTCTTGAGATCATGAGTGGAAGAAAAGTGTTTGATACTTTGAATTCATCAGTGGTTTCAATCACAGATTGGGCATGGACACTTGCAGAATCGGGGAAGATGAAGGAAATTGTTGATCAGTCAATAAGAGAAGAAGGGCCAGAAAAAATCATGGAAAGGTTTGTTTTTGTTGGAATGCTTTGTGCTCATACAATGGTGGTATTAAGGCCTACTATAGCAGAGGCACTCAAGATGTTAGAGGGTGACATTGATATTCCTATTTTACCAGACAGGCCAGTACCACTGAGTCATGTATCGTTTCAATCTTCTCTGCTGAATAGTTTGTAA 1794 0.398 MDKQLILLSLLMSLFTNSISNAASSSCPMDLSYVETFPWETSTCRDPIDTQQCCQALLSLFGIGLAQHLKETSLFQLPDKNTSSTCLSDFKVKLAALSIQPSLVHSCFPNSAQFVTNSSNCAGIKTVQDWKQKVGIMNPLDRYCDGDLKDQTNCNICTDAGFRVTSQLNSIDPNATKCFYFTILYAAAVVNPFGTTDVSATSCILGLQLSSAAASKGSSNREQGLTLKLVFALLGAVIGVLLAFVLVIMYRKWDKRRKEDLYHRNIENNVKDSVLPNAGAKWFHISELEKATNKFSERNVIGQGGDGIVYKGTLSDGTMVAVKEIFNLETKGDEEFCYEVEIISKIKHRNLVSIRGCCVSSDNLKGKRRFLVYDFIPNGNLSYQLSLVGANRLTWPQRKNIILDVAKGLAYLHYEIKPPIYHRDIKATNILLDSKMSAKLADFGLAKQGNEGQSHLTTRVAGTYGYVAPEYALYGQLTEKSDVYSFGIVILEIMSGRKVFDTLNSSVVSITDWAWTLAESGKMKEIVDQSIREEGPEKIMERFVFVGMLCAHTMVVLRPTIAEALKMLEGDIDIPILPDRPVPLSHVSFQSSLLNSL. 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02460 597 ProSiteProfiles Protein kinase domain profile. 295 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02460 597 SMART serkin_6 295 545 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02460 597 Pfam Protein kinase domain 296 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02460 597 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 27 - -
Seca8g02460 597 Gene3D Transferase(Phosphotransferase) domain 1 376 573 - -
Seca8g02460 597 Gene3D Phosphorylase Kinase; domain 1 256 375 - -
Seca8g02460 597 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 376 576 - -
Seca8g02460 597 ProSitePatterns Serine/Threonine protein kinases active-site signature. 420 432 IPR008271 GO:0004672|GO:0006468
Seca8g02460 597 FunFam Receptor-like serine/threonine-protein kinase At4g25390 260 375 - -
Seca8g02460 597 CDD STKc_IRAK 301 570 - -
Seca8g02460 597 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 92 584 - -
Seca8g02460 597 Pfam SPARK 22 178 IPR043891 -
Seca8g02460 597 SUPERFAMILY Protein kinase-like (PK-like) 280 587 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02460 Seca-Chr8 52904751 52906544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02460 16 590 Receptor kinase-like Gene Family AT1G11050 51.261 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Seca8g02460 Pkinase 3.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02460 - - gmx:100820563 934.48