Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02458 ATGTCGACACAGAATCGACGTCATTCGTCGTTTTCTTCCTCAACGACGTCGTCTCTCGCGAAACGAAATCCATCGTCGTCGTCGACGTTGGCTAAGAAGAGAGCGCCTCTCACCAACCTCACCAATCAGAGGACTGCGCCGCACGCTGCTTCCCGTAACTCGGGTCCTTCCTCTACTTTGGTACCACCATGTTCAACTAAAATTGCCAAGAGCAAGAAAGGGTCTCCTGTCTGCACCAGCATCACTAGGTCAGCAAGTTGTGGGAACAAATTGCAGAATGTGAAACCAAGCGTAGTTGTTTTTCCAAAGGCTACTTCTGTCCCACAAAAGAATGTTGCTGCTCCCACAGTTGCCACTGTCCCTGTGCCTGTTCCAACCATCAAGGATGTTACTCCTTATGAATCATCAGATGCAATGTCCATTTCTATGGATGACAGTACTGTGTCTTCTTGTGGGTCTATCAAGAGTCCTGAAGTTGTATATCTGGACAACTGTGATATTTCAGCTGTTGATTCAATTCAGAGAAAGACATTCAGCAATTTGAACATATCTGATACTACAGAGCCTGCAGGTAACATCTGTAGTAAAGACATAATTGTTGGATTGGAAAGAGAGGATAAGGTTGCTGATATTGATGATAATTACACGGATCCGCAGCTTTGTGCAACCTATGCCTGTGACATCTACAAGCACCTTCGTGCATCCGAGGCAAAGAAAATGCCTTCCCCAGACTTCATGGAGAGAATTCAGAAGGACATAAATGTCAGCATGCGCGCTATATTGATTGACTGGCTTGTGGAGGTGGCTGAGGAGTATAGGCTTGTACCTGATACCTTGTATTTGACAGTGAACTACATAGATCGGTATCTTTCAGGGAATGCAATGAATAGGCAAAAGTTACAATTACTTGGTGTTGCGTGCATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTAGAGGAATTTTGTTTTATAACTGATAACACGTACGTCAAAGAAGAGGTTTTGCGAATGGAATCTGCTGTCTTGAATTATCTTAAGTTTGAAATGACAGCCCCAACAACAAAATGTTTCTTAAGACGATTTGTTCGTGCAGCTCAAGATGTCAACGAGGTCCCTTCACTGCAACTAGAGTGCTTGACCAACTATATTGCCGAATTATCTCTCTTGGAATACAGTATGCTTTGTTATGCACCATCACTGATTGCTGCTTCTGCAATTTTCCTGGCCAAATTTATACTTTTCCCTTCAAAGAAACCATGGGTATGTTGCTAA 1284 0.4338 MSTQNRRHSSFSSSTTSSLAKRNPSSSSTLAKKRAPLTNLTNQRTAPHAASRNSGPSSTLVPPCSTKIAKSKKGSPVCTSITRSASCGNKLQNVKPSVVVFPKATSVPQKNVAAPTVATVPVPVPTIKDVTPYESSDAMSISMDDSTVSSCGSIKSPEVVYLDNCDISAVDSIQRKTFSNLNISDTTEPAGNICSKDIIVGLEREDKVADIDDNYTDPQLCATYACDIYKHLRASEAKKMPSPDFMERIQKDINVSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNAMNRQKLQLLGVACMMIASKYEEICAPQVEEFCFITDNTYVKEEVLRMESAVLNYLKFEMTAPTTKCFLRRFVRAAQDVNEVPSLQLECLTNYIAELSLLEYSMLCYAPSLIAASAIFLAKFILFPSKKPWVCC. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02458 427 FunFam Cyclin superfamily protein, putative 351 425 - -
Seca8g02458 427 Gene3D - 241 354 - -
Seca8g02458 427 Pfam Cyclin, C-terminal domain 356 424 IPR004367 -
Seca8g02458 427 SUPERFAMILY Cyclin-like 356 424 IPR036915 -
Seca8g02458 427 MobiDBLite consensus disorder prediction 1 78 - -
Seca8g02458 427 SUPERFAMILY Cyclin-like 216 353 IPR036915 -
Seca8g02458 427 FunFam Mitotic cyclin 6 241 341 - -
Seca8g02458 427 Pfam Cyclin, N-terminal domain 227 353 IPR006671 -
Seca8g02458 427 Gene3D - 227 424 - -
Seca8g02458 427 MobiDBLite consensus disorder prediction 1 65 - -
Seca8g02458 427 PIRSF Cyclin_A_B_D_E 1 427 IPR046965 GO:0016538|GO:0044772
Seca8g02458 427 PANTHER CYCLINS 174 414 IPR039361 -
Seca8g02458 427 SMART cyclin_7 360 427 IPR013763 -
Seca8g02458 427 SMART cyclin_7 263 347 IPR013763 -
Seca8g02458 427 CDD CYCLIN_AtCycA_like_rpt1 217 352 - -
Seca8g02458 427 ProSitePatterns Cyclins signature. 258 289 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02458 Seca-Chr8 52670173 52674802 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02458 4 424 Core Cell Cycle Gene Families AT1G44110 58.237 7.32e-161 459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02458 K06627 - gmx:100789565 558.525