Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02453 ATGGTTCACGAACTTGCAAGTGAATCAAGTAAGAAAAGGTACGATAAATTTTTGTTCCGGTCTTATGTTGAAAATAATAAGAAGATTAAGTGGTTTCCTGCTCCTGCTTGTGGGTATGTTGTAAGTTTTGAAGCTGATGGTTATAGAAAAAATTTCGATGTTACATGCCTTTGTTATCATAGTTTTTGTTGGAGATGTGGGGAAGAGGCTCATAGGCCTGTAGATTGTGAAACAGCACATCAATGGATAAGAAAGAATAAGTCTGAATCTGAAATTGTTGATTGGCTTGTTGCTCATACTAAACCATGTCCTCTGTGCAAGATACCCATTGAGAGAAACTCAGGGTCCACACACATGATGTGTAATTGTGGATTTCAATTTTGTTGGTTATGTCTTGTTGATTGGTTTGCTTTTAGACCTTGCAAATTCCATAATAATCAGTTTCAAGAGACTAGCAAGAAGGAAATAGAAAGTAAGATGTCAAAGGGTTATTTTGATAGGTACATTTACTATTATGATCATTGGGCTAGAAATGATGTTTTAAGAAAAAATGTCATTGAAAATTTGATTTACCTTACACCTATAACAAGACTGTGTAAGTTGTTTCAAAGGCCTGAAACTGATTTTAATTTTATAATTAAGGCTTGGAAACAAGTGATTGAATGTAGAGGGATACTAAAATGGTGTTATACATATGGATATTATCTCCCTGATAATATAAAGGTCAAGAAGGACTTTTTTGAGTACATCCAACATAAGGCTGAGGTTACTTTCGAAAAGCTTGATCAATGTGTAGGAATGGAACAGAGAGAGTATCTAAATGGTGAGCGAAAAGATGAATTTAATGATTTTTGTTTGAAGCTAGTCAATTTGACTAATGTGACCAAGAACTATTTAGACAAGTTGGTGCAAGCGTTAGAGGATGGCCTTGTTGATGTGCATGTGAATAACGACACAAGTATGAAAAGAAAATCAAGTGAGATAGACAATACCTCTTATCGAAGGGGAACTAAGAGAATAATTACCATTGATGGACTGGCCAAAAATGATCTCTGA 1056 0.3475 MVHELASESSKKRYDKFLFRSYVENNKKIKWFPAPACGYVVSFEADGYRKNFDVTCLCYHSFCWRCGEEAHRPVDCETAHQWIRKNKSESEIVDWLVAHTKPCPLCKIPIERNSGSTHMMCNCGFQFCWLCLVDWFAFRPCKFHNNQFQETSKKEIESKMSKGYFDRYIYYYDHWARNDVLRKNVIENLIYLTPITRLCKLFQRPETDFNFIIKAWKQVIECRGILKWCYTYGYYLPDNIKVKKDFFEYIQHKAEVTFEKLDQCVGMEQREYLNGERKDEFNDFCLKLVNLTNVTKNYLDKLVQALEDGLVDVHVNNDTSMKRKSSEIDNTSYRRGTKRIITIDGLAKNDL. 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02453 351 ProSiteProfiles Zinc finger CCHC-type profile. 63 76 IPR001878 GO:0003676|GO:0008270
Seca8g02453 351 Pfam IBR domain, a half RING-finger domain 93 135 IPR002867 GO:0008270
Seca8g02453 351 Pfam IBR domain, a half RING-finger domain 12 76 IPR002867 GO:0008270
Seca8g02453 351 SMART ibrneu5 12 76 IPR002867 GO:0008270
Seca8g02453 351 SMART ibrneu5 84 141 IPR002867 GO:0008270
Seca8g02453 351 Gene3D - 72 313 - -
Seca8g02453 351 ProSiteProfiles TRIAD supradomain profile. 1 150 IPR044066 -
Seca8g02453 351 SUPERFAMILY RING/U-box 95 147 - -
Seca8g02453 351 SUPERFAMILY RING/U-box 13 83 - -
Seca8g02453 351 CDD BRcat_RBR_ANKIB1 20 85 - -
Seca8g02453 351 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 11 229 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02453 Seca-Chr8 52443423 52444478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02453 1 313 C3H Transcription Factor Family AT2G31510 46.341 2.13e-100 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02453 K11968 - gmx:100801350 349.747