Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02448 ATGGAACGTGAAGAAGACATACAATCACCCCATAAAACCCCATACACTCAACTTGAACAAGTTAACTCAGATTTTATTCTAGCAATTAGCATGCAAGAGCAAGATGGAACACTCACAGCTCTTGCAACATTTGAAAGTGAAAGTGAGGGTGACTCTTCTTTTGATGACAATGGTTATGATGGGGATGCTGATTTTTTCCTGAGCCAAGAGTTTGAAAGTGACCTTCAGTTTCATGAGAGTGAAGGAAGCAATGATGAAGATGAAGAAATGGAAGAAGAAGAAGAAGATGATATTGATGTAGATGAATTGACTTATGAAGAGTTGATTGAGTTGGGAGATTTTATTGGAAAAGAGAAAAGAGGATTATCAGCAAGTGAAATTTCTTCATGTTTGCATGCTTACACTAGCAATTCTGCTGAAAACAAAAGTGGTATTGACAGATGTGTAATTTGTCAAGTTGAATATGAAGAAGGTGAAGCCTTGGTGGCACTTCAATGTGAACACCCTTATCATACAGATTGCATAAGCAAGTGGCTTCAAATCAAGAAGGTTTGTCCAATATGTAGCAGTGAAATTTCTGTTCCCAAGATGGTGAATAATTAA 603 0.3698 MEREEDIQSPHKTPYTQLEQVNSDFILAISMQEQDGTLTALATFESESEGDSSFDDNGYDGDADFFLSQEFESDLQFHESEGSNDEDEEMEEEEEDDIDVDELTYEELIELGDFIGKEKRGLSASEISSCLHAYTSNSAENKSGIDRCVICQVEYEEGEALVALQCEHPYHTDCISKWLQIKKVCPICSSEISVPKMVNN. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02448 200 SUPERFAMILY RING/U-box 147 195 - -
Seca8g02448 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 195 IPR013083 -
Seca8g02448 200 MobiDBLite consensus disorder prediction 76 98 - -
Seca8g02448 200 Pfam Ring finger domain 147 188 IPR001841 -
Seca8g02448 200 ProSiteProfiles Zinc finger RING-type profile. 148 189 IPR001841 -
Seca8g02448 200 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 4 93 IPR043312 -
Seca8g02448 200 MobiDBLite consensus disorder prediction 81 98 - -
Seca8g02448 200 FunFam E3 ubiquitin ligase BIG BROTHER-related 114 195 - -
Seca8g02448 200 SMART ring_2 148 188 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02448 Seca-Chr8 52270962 52271564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02448 95 192 C3H Transcription Factor Family AT3G63530 49.505 3.38e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02448 K19045 - gmx:100777284 280.026
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02448 8 52270962 52271564 Seca8g02448 8 52270962 52271564 ECH
Seca4g02315 4 39385375 39385959 Seca8g02448 8 52270962 52271564 PCT