Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02446 ATGGCGTCAGAGCTTCAATTGCCACCTGGATTCAGATTCCATCCCACCGATGAAGAACTTGTCTTGCACTATCTCTGCCGGAAATGCGCGTCACATCCAATCGCCGTTCCGATCATCGCTGAAATCGATCTTTACAAGTATGATCCATGGGACCTTCCAGGAATGGCCTTGTACGGAGAGAAGGAGTGGTATTTCTTTTCTCCAAGAGACAGAAAATATCCAAATGGTTCGAGGCCGAACCGGGCTGCTGGGACTGGATACTGGAAGGCAACTGGAGCAGATAAACCAATTGGCCAGCCGAAACCGGTTGGAATAAAAAAGGCTCTAGTGTTTTACGCAGGAAAAGCACCCAAAGGAGAGAAAACTAACTGGATTATGCATGAATACCGTCTTGCAGATGTGGATCGTTCGGTTCGCAAAAAGAATAGTTTGAGGCTTGATGACTGGGTGCTTTGTCGCATTTACAACAAGAAAGGCGTGGTCGAGAAGCAGCCAAGCGTTAACTGCAAAATCGAATGCTCAGAAACAGAGGACATGAAGCCGGAGATTCTCACAACTGCCGGAGCATATCTTCCACCGCCTCCTCCGCCGCCAGCGACGGTGACAGACTGCGTTTACTTCGACACCTCCGACTCAGTCCCGAAGCTTCACACGACGGACTCTAGCTGCTCCGAGCACGTGGTGTCGCCGGAGTTCGCTAGCGAGGTGCAGAGCGAGCCCAAGTGGAACGAGTGGGACAAAAAGAATAATAACAATAATAATAGCCTTGACTTTTCGTATAATTACCTGGATGCCACTCTCAATAGTGGTGGTAACTTCGGTTCCCAGTTCCAGAGTGGTAATAATCAGATGTCGCCGCTGCAGGATATCTTCATGTACCTCTCCAAGCCCTTCTGA 897 0.4939 MASELQLPPGFRFHPTDEELVLHYLCRKCASHPIAVPIIAEIDLYKYDPWDLPGMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGQPKPVGIKKALVFYAGKAPKGEKTNWIMHEYRLADVDRSVRKKNSLRLDDWVLCRIYNKKGVVEKQPSVNCKIECSETEDMKPEILTTAGAYLPPPPPPPATVTDCVYFDTSDSVPKLHTTDSSCSEHVVSPEFASEVQSEPKWNEWDKKNNNNNNSLDFSYNYLDATLNSGGNFGSQFQSGNNQMSPLQDIFMYLSKPF. 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02446 298 FunFam NAC transcription factor 16 161 - -
Seca8g02446 298 ProSiteProfiles NAC domain profile. 7 157 IPR003441 GO:0003677|GO:0006355
Seca8g02446 298 Gene3D NAC domain 16 161 IPR036093 GO:0003677|GO:0006355
Seca8g02446 298 Pfam No apical meristem (NAM) protein 8 131 IPR003441 GO:0003677|GO:0006355
Seca8g02446 298 PANTHER NAC TRANSCRIPTION FACTOR 56 7 220 - -
Seca8g02446 298 SUPERFAMILY NAC domain 4 157 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02446 Seca-Chr8 52179146 52181529 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02446 1 298 NAC Transcription Factor Family AT1G01720 73.333 8.32e-161 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca8g02446 NAM 1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02446 - - gmx:100805768 461.07