Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02443 ATGACTTGTATTTATCGCGGTTCCCAAAATAAGCCACATTATATACTATTTACTGCGGTTGCTTTAAGGAACCGTGTTTTTTTAGCCACCCGGATTGATGAACACACACTATCATTCTGGCCACTTTCACTGTCCTCTAGGGTTCACAAGATAGGGAGGGAAGAAAGGGGTCATGGCAGCAGCCGCTTGACTACGACGCCGTCTGGCCGCGATGATGCGTTGGGAGGCCGCCGTGACGGCAAAGCTGCACAAGGAGAGGATGGCGATCGTTGGCCGCGACTGAAACGACGCGCACGGAGCGTGATGGGCCCTGCAGAGGCACGCGGTGGTGGCATGGACAACGGCCATTTTGGCTGCGACTTGGAAGTGGTTCAGGGAGTGGTTCTCTCTCTGCCACCGTCGCGATGGGATTTTGCAATTCTACTACCCTTCCTTTTCTTGTTCTCGATTCCCTTTCTGATTGGTTTGCTTCTTCTCACTGTCGTTGATTTCTCTGTCCCCAACACCATTTCTCTACCCACACAATGCAAAATCGTCTCCAGTGGGAAGACTTTAGATTTTATGCGGACTTATGTTTTTAAAACATTTGGTGAGAGAGTCAAGTATTGGGTCACCTTCAACCTGCTAAATTTATTAGTGCCACATGGTTACCGTTCAGCTAATGACCATGTTTCCCATTCTGGAACTATACACGTTGAATTGATGAAATCTCAAGCCAAATTCTTAACTGTGTTTTGTATGTGGAATTTGGTTGGTGCTTACGTTGTTGTTTGGTTTGGTTTGTGGTGGCAGAGTGTGAAGGTTAATCTGATAATGACGGATTATTCCATGTCGGGGATGACAGGATATGAACTACTCAAGAAAATCAAGCAGGAGTTTTTTGTTTTTAGAGAGATTCCAGTGGTGATCATGTCGTCGGGGAATATCTTGACTCGTATTGATAGGTAA 948 0.4631 MTCIYRGSQNKPHYILFTAVALRNRVFLATRIDEHTLSFWPLSLSSRVHKIGREERGHGSSRLTTTPSGRDDALGGRRDGKAAQGEDGDRWPRLKRRARSVMGPAEARGGGMDNGHFGCDLEVVQGVVLSLPPSRWDFAILLPFLFLFSIPFLIGLLLLTVVDFSVPNTISLPTQCKIVSSGKTLDFMRTYVFKTFGERVKYWVTFNLLNLLVPHGYRSANDHVSHSGTIHVELMKSQAKFLTVFCMWNLVGAYVVVWFGLWWQSVKVNLIMTDYSMSGMTGYELLKKIKQEFFVFREIPVVIMSSGNILTRIDR. 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02443 315 Gene3D - 250 314 - -
Seca8g02443 315 MobiDBLite consensus disorder prediction 53 95 - -
Seca8g02443 315 MobiDBLite consensus disorder prediction 72 95 - -
Seca8g02443 315 Gene3D Glycosidases 157 249 - -
Seca8g02443 315 SUPERFAMILY CheY-like 263 306 IPR011006 -
Seca8g02443 315 SUPERFAMILY (Trans)glycosidases 191 228 IPR017853 -
Seca8g02443 315 PANTHER TWO-COMPONENT RESPONSE REGULATOR 265 315 IPR045279 GO:0009736
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02443 Seca-Chr8 52149152 52153563 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02443 263 315 Response Regulator Gene Family AT3G48100 77.358 1.61e-19 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g02443 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02443 K14492 - gmx:100527518 90.8929