Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02440 ATGGACTCAATTCTACCGAGTATTGTTGCACGTGCTAGGGGCATGATTGAACACAACAATGAAGGACGTCACATGTTGGCGATGACTGTGATTCTTTGCAGTGCAACATGGCCGACGCACAGTGCAGATGAAGAAGGTATTGATCATGACCTTATGAAGTCACTCGAAATTTTCAAATTTGATGATAATGATTCTTGTTCGGAACTTTGCTCAATTTGTTTGGAGGGGTTGTGCAGTGGTGGATCTGAGTCAAAAGTTGTTCGCACCAAGTGCTTCCATGTTTTCCATGAAAAGTGCATTTCTCAATGGCTTCTGAACTGTAACAACAACAATCAATCTTGTTCATGCCCATTGTGTCGTTGCCAAATTGCTTCTTGA 378 0.4206 MDSILPSIVARARGMIEHNNEGRHMLAMTVILCSATWPTHSADEEGIDHDLMKSLEIFKFDDNDSCSELCSICLEGLCSGGSESKVVRTKCFHVFHEKCISQWLLNCNNNNQSCSCPLCRCQIAS. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02440 125 SUPERFAMILY RING/U-box 52 123 - -
Seca8g02440 125 PANTHER SI:CH211-59O9.10 52 124 - -
Seca8g02440 125 Pfam Ring finger domain 70 120 IPR001841 -
Seca8g02440 125 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 124 IPR013083 -
Seca8g02440 125 ProSiteProfiles Zinc finger RING-type profile. 70 120 IPR001841 -
Seca8g02440 125 SMART ring_2 70 119 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02440 Seca-Chr8 52120094 52120471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02440 67 123 C3H Transcription Factor Family AT4G12190 43.860 4.21e-10 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02440 - K22378 lang:109327943 85.1149