Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02439 ATGAAGTCGCTTGAAATTTTCAATTTTGATGATGATGATTCTTGTTCGGTGCAATGCGCAATTTGTTTGGAGGGGTTGTGCACAAGTGGATCTCAATCAAAAGTTGTTCGCACCAAGTGCCTGCATATGTTCCATGAAAAGTGCATTTTTCAATGGCTTTTGAGCTGTAACAACAACAATCAACCTTGTTCATGCCCATTGTGTCGTTGCCATATTGCCTCTTGA 225 0.4044 MKSLEIFNFDDDDSCSVQCAICLEGLCTSGSQSKVVRTKCLHMFHEKCIFQWLLSCNNNNQPCSCPLCRCHIAS. 75
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02439 74 PANTHER SI:CH211-59O9.10 2 73 - -
Seca8g02439 74 ProSiteProfiles Zinc finger RING-type profile. 19 69 IPR001841 -
Seca8g02439 74 SUPERFAMILY RING/U-box 10 72 - -
Seca8g02439 74 Pfam Ring finger domain 18 69 IPR001841 -
Seca8g02439 74 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Seca8g02439 74 SMART ring_2 19 68 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02439 Seca-Chr8 52111505 52111729 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02439 19 72 C3H Transcription Factor Family AT4G12190 37.037 7.88e-08 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02439 - - lang:109327943 80.1073