Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02438 ATGAAGTCACTCGAAATTTTCAAATTTGACGATGATGATGATTCTCGTTCGGAACTTTGCTCAATTTGCCTGGAGGGGTTGCGCAGTGGTGGATCTGAGTCAAAAGTTGTTCGCACCAAGTGCTTCCATATTTTCCATGAAAAGTGCATTTCTCAATGGCTTCTGAGCTGTAACAACAACAATCAATCTTCTTCATGCCCATTGTGTCGTTGCCAAATTCCTTCTTGA 228 0.4167 MKSLEIFKFDDDDDSRSELCSICLEGLRSGGSESKVVRTKCFHIFHEKCISQWLLSCNNNNQSSSCPLCRCQIPS. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02438 75 ProSiteProfiles Zinc finger RING-type profile. 20 70 IPR001841 -
Seca8g02438 75 Pfam Ring finger domain 20 70 IPR001841 -
Seca8g02438 75 SUPERFAMILY RING/U-box 4 73 - -
Seca8g02438 75 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Seca8g02438 75 SMART ring_2 20 69 IPR001841 -
Seca8g02438 75 PANTHER SI:CH211-59O9.10 2 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02438 Seca-Chr8 52104170 52104397 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02438 17 73 C3H Transcription Factor Family AT4G12190 40.351 1.11e-10 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02438 - K22378 lang:109327943 81.2629