Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02437 ATGGACTCCATTACAATGTCGTCGTGCCCTCCGCGCCTACGCGATCAGCCGCTGTCATCTCCTCCACCAGCACTCACATCGACTCCGCTGTCATATCCTCTGGCAACTTCTCCAGCTCCGGCTCCGGCTCCGGCTCCTGCCAAGTTGAAGAGTAAGGCCCTTGCATTGGCACCCGTTTCGCCATCAGAAGCTCCCGGTCCGAGCCTGTCCTTCATCTATCCCTCTGGCAGCGATGATAGGGATGGAGCTGCTTCCACATCAGAAAAGACATTTGATGCAAAGACACTAAGGCGTTTCACTCAAAACAGGGAGGCTGCAGCAAAAAGCCGTCTCACGAAAGAGTTATTGGTAGAAGATAAAAGACTGTACATAGCATTCTCAAGGAGTAACTTCAAGTTCTTCCATTTTAGTAACTCAAGTGCTAGAGCTGCAAGTTTGTCTTTTTCACCTTTCTTAATCTTGAGACAGTGTTCATTCATGGAATCCTACACTCGCTTCTCTATCCTTCCTCTTGAAGGATTCAGCCCACATTATTTGTCACAAGAAGAAAGTCCTTTATGGCTATTGGACTACTTCTTTGTTAATTTTCATTGTCACAGGCACACAAATCATTCCCCCCGCCAGAGTCCTTCAACCCACAATGAAATAGCAGCCCCAATAACTACATTTGATCAATCCTACTTGATTCATCGTGAGATCATCTCTGATCTTGACACATTCGGAGTCATAGATCCTGTATTCTATTTGGGGGAAATCTTCTCCTCTGAACCTGTTGTACCTGTTTCTTCAGAGTTAATGGACTCAATTCTACCGAGTCTTGTTGCACGTGCTAGGGGCATGATTGAACACAACAATGAAGGACGTCACATGTTGGCGATGACTGTGATTGTTTGCAATACCACATGGTCGAGGCACAGTGCAGATGAAGAAGGTATTGATCATGACCTTATGAAATCGCTTGAAATTTTCAAATTTGACCAGGATGATTCTTGTTCGGAACCATGCGCAATTTGTCTGGAGGGGTTGGGCACTAGTGGATCTGAGTCAAAAGTTGTTCGCACCAAGTGCTTTCATGTTTTCCATGAGAAGTGCATTTATCAATGGTTTCTGTGTTGCAACAACGACAATAAATCTTGTTCATTGCCCATTGTGTCGTTGTCAAATTGTTTCTTGATTTTTTTTTTTTTTGGTATTGTTACATGGAGGACCAAATCCCAATTCTTGATTGGATTGTCAAATTTTCGTGGTCTTAATTTCCATGAAATAGGTTTCAATTAA 1278 0.4366 MDSITMSSCPPRLRDQPLSSPPPALTSTPLSYPLATSPAPAPAPAPAKLKSKALALAPVSPSEAPGPSLSFIYPSGSDDRDGAASTSEKTFDAKTLRRFTQNREAAAKSRLTKELLVEDKRLYIAFSRSNFKFFHFSNSSARAASLSFSPFLILRQCSFMESYTRFSILPLEGFSPHYLSQEESPLWLLDYFFVNFHCHRHTNHSPRQSPSTHNEIAAPITTFDQSYLIHREIISDLDTFGVIDPVFYLGEIFSSEPVVPVSSELMDSILPSLVARARGMIEHNNEGRHMLAMTVIVCNTTWSRHSADEEGIDHDLMKSLEIFKFDQDDSCSEPCAICLEGLGTSGSESKVVRTKCFHVFHEKCIYQWFLCCNNDNKSCSLPIVSLSNCFLIFFFFGIVTWRTKSQFLIGLSNFRGLNFHEIGFN. 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02437 425 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 87 379 - -
Seca8g02437 425 MobiDBLite consensus disorder prediction 1 47 - -
Seca8g02437 425 CDD RING-H2 335 379 - -
Seca8g02437 425 SMART ring_2 335 372 IPR001841 -
Seca8g02437 425 ProSiteProfiles Zinc finger RING-type profile. 335 379 IPR001841 -
Seca8g02437 425 SUPERFAMILY RING/U-box 317 375 - -
Seca8g02437 425 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 388 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02437 Seca-Chr8 52089691 52095071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02437 60 119 bZIP Transcription Factor Family AT1G08320 50.000 1.83e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02437 K14431 - aip:107606654 75.0997