Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02434 ATGAAATCGCTTGAAATTTTCAAATTTGACCAGGATGATGATTCTTGTTCGGAACTATGCGCAATTTGTTTGGAGGGGTTGGGCACCAGTGGATCTGAGTCAAGAGTTGTTCGCACCAAGTGTTTTTATGTTTTTCATGAAAAGTGCATTTATCAATGGTTTCTGCGCTGCAACAACGACAATAAATCTTGTTCATGCCCATTGTGTCGTTGTCAAATTGTTTCTTGA 228 0.3904 MKSLEIFKFDQDDDSCSELCAICLEGLGTSGSESRVVRTKCFYVFHEKCIYQWFLRCNNDNKSCSCPLCRCQIVS. 76
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02434 75 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 75 IPR013083 -
Seca8g02434 75 SMART ring_2 20 69 IPR001841 -
Seca8g02434 75 ProSiteProfiles Zinc finger RING-type profile. 20 70 IPR001841 -
Seca8g02434 75 Pfam Ring finger domain 20 70 IPR001841 -
Seca8g02434 75 SUPERFAMILY RING/U-box 2 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02434 Seca-Chr8 52057572 52057799 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02434 17 73 C3H Transcription Factor Family AT4G12190 36.842 8.32e-09 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02434 - K15692 lang:109327943 83.1889