Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02426 ATGGACTCAATTCTACCTAGTCTTGTTGAACGTGCTAGGGGCATGATTGAACACAACAATGAAGGACGTCATATGTTGGTGATGACTGTGATTCTTTGCAGTACCACATGGCCGACGCACAGTGCAGATGAAGAAGGTATTGATCATGACATTATGAAGTCGCTTGAAATTTTCAAATTTGACGATGGTGATGATTCTTGTTCAGAACTATGCTCAATTTGTCTCGAGGGGTTGGACACTGGTGGATCTGAGTCAAAAGTTGTTCGCACCAAGTGCTTCCACGTTTTTCATGAAAAGTGCATTTCTCAATGGCTTCTGAGCTGTAATCACAACAATCAATCTTGTTCATGCCCATTGTGTCGTTGCCAAATTGCTTCTTGA 381 0.4199 MDSILPSLVERARGMIEHNNEGRHMLVMTVILCSTTWPTHSADEEGIDHDIMKSLEIFKFDDGDDSCSELCSICLEGLDTGGSESKVVRTKCFHVFHEKCISQWLLSCNHNNQSCSCPLCRCQIAS. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02426 126 ProSiteProfiles Zinc finger RING-type profile. 71 121 IPR001841 -
Seca8g02426 126 Pfam Ring finger domain 71 121 IPR001841 -
Seca8g02426 126 PANTHER SI:CH211-59O9.10 53 125 - -
Seca8g02426 126 CDD RING-H2 71 121 - -
Seca8g02426 126 SUPERFAMILY RING/U-box 51 124 - -
Seca8g02426 126 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 34 125 IPR013083 -
Seca8g02426 126 SMART ring_2 71 120 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02426 Seca-Chr8 52012633 52013390 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02426 68 124 C3H Transcription Factor Family AT4G12190 42.105 2.59e-09 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02426 - K22378 cam:101511314 89.3521