Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02425 ATGAAAGTATTATACAGTTGTGGAATGAAAATAAGGGCTGATGATCCAGCTGTGATGAAAAATTTCATTCTTAGTGTTCAGAATGCATCAAATAAGTTGAAAGCTTCCTCTGGACATGATCATGAAAAGAAAATAAGTAAAAGAAGGGATGGAGCTGCTTCCACATCAGAAAAGACATTTGATGCAAAGACACTAAGGCATTTCACTAAAAACAGGGAGGCTGCAACAAAAAGCCGTCTCATGAAAGAGTGTTCATTCATGGAATCCTACACTCGCTTCTCTATCCTTCCTCTTGAAGGATTCAGCCCACATTATTTGTCACAAGAAGAAAGTCCTTTATGGCTATTGGACTACTTCTTTGTTAATTTTCATTGTCACAGGCACACAAATCATTACCCCCGCCAGACTCATTCAACCCACAATGAAATAGCAGCCCCAATAACTACATTTGATCAATCCTACTTGATTCATCGTGAGATCATCTCTGATTTTGACACATTCGGAGTCATAGATCCTGTATTCTATTTGCGGGAAATCTTCTCCTCTGAACCTGTTGTACCCGTTTCTTCTGAGTTAATGGACTCAATTCTACCGAGTCTTGTTGCACGTGCCAGGGGCATGATTGAACACAACAATGAAGGACATCACATGTTGGCGATGACTGTGATTGTTTGCAATACCACATGGCCGAGGCACAGTGCAGATGAAGAAGGTATTGATCATGACCTTATGAAATCGCTTGAAATTTTCAAATTTGATGATGATGATGATTCTTGTTCGGAACTATGTGCAATTTGTCTCGAGGGGTTGGGCACTAGTGGATCTGAGTCAAAAGTTATTCGCACCAAATGCTTCCATGTTTTCCATGAAAAGTGCATTTCTCAATGGTTTCTGCGTTGTAACAACGACAATAAATCTTGTTCATGCCCATTGTGTCGTTGCCAAATTGCTTCTTGA 957 0.4002 MKVLYSCGMKIRADDPAVMKNFILSVQNASNKLKASSGHDHEKKISKRRDGAASTSEKTFDAKTLRHFTKNREAATKSRLMKECSFMESYTRFSILPLEGFSPHYLSQEESPLWLLDYFFVNFHCHRHTNHYPRQTHSTHNEIAAPITTFDQSYLIHREIISDFDTFGVIDPVFYLREIFSSEPVVPVSSELMDSILPSLVARARGMIEHNNEGHHMLAMTVIVCNTTWPRHSADEEGIDHDLMKSLEIFKFDDDDDSCSELCAICLEGLGTSGSESKVIRTKCFHVFHEKCISQWFLRCNNDNKSCSCPLCRCQIAS. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02425 318 SMART ring_2 263 312 IPR001841 -
Seca8g02425 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 226 317 IPR013083 -
Seca8g02425 318 MobiDBLite consensus disorder prediction 34 58 - -
Seca8g02425 318 CDD RING-H2 263 313 - -
Seca8g02425 318 ProSiteProfiles Zinc finger RING-type profile. 263 313 IPR001841 -
Seca8g02425 318 MobiDBLite consensus disorder prediction 35 58 - -
Seca8g02425 318 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 153 314 - -
Seca8g02425 318 SUPERFAMILY RING/U-box 243 316 - -
Seca8g02425 318 Pfam Ring finger domain 263 313 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02425 Seca-Chr8 51977098 51980909 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02425 238 318 Rapid Response to Elicitors AT3G16720 34.568 2.82e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02425 - K17583 psat:127099352 97.0561