Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02422 ATGTCAAAGTCTCCCTCTCCTGATCAACAGCAGTCCATTTATTCTGCTTCTCAGCCTATGGAATTCAATGAGGCAACAGGAATGGACGATCCAGAATCTACAATGGCAACAGTTGCTAATTTTGTGGAGCAACTTCATGCCAACTTATCATCACCACTTGAGAAAGAGCTTATTACATCACACTTGCTAGGTATTGCCAGGAGAAGAAAGGATGCTAGAACACTTATCGGTTCTCATGCCCAAGCCATGCCATTGTTCATAAACATTCTCAGAAATGGAACCCCTCTTGCAAAAGTTAATGTTGCTTCCACTCTCAGTGTCCTATGCAAAGATGAAGACTTGAGGTTAAAAGTACTTCTTGGTGGTTGTGTCCCACCATTACTGTCGCTTTTAAAAAATGAATCGACTGATGCCAGGAAGGCAGCAGCAGAAGCAATTTATGAAGTTTCCTCAGGTGGTCTTTCAGATGATCGTGTTGGTATGAAAATTTTTGTTACAGAAAGTGTAGTTCCAACCTTATGGAATCAACTAATTCCAAAGAACAAGGAAGACAAAGTCGTGGAGGGTTTTATTACTGGAGCATTGAGAAATCTGTGTGGGGACAAAGATGGCTATTGGAAAGCAACATTAGAAGCCGGAGGTGTGGATATTATTGTGGGTCTCTTGTCTTCAGATAATGCTGTTTCTCAGTCAAATGCAGCTTCTCTATTGGCTCGGTTAATGCTGGCTTTCAGTGATAGCATCCCCAAAGTAATAGACTCAGGAGCAGTCCAAGCTTTACTTCGTCTTCTTGGTCAGGAAAACGATATTTCTGTACGGGCTAGTGCTGCTGATGCCCTAGAGGCCCTTTCTTCAAAGTCTACCAAGGCTAAAAAGGCTATTGTTAGTGCAGATGGTGTTCCAATCCTTATTGGAGCTATAGTTGCTCCTTCTAAAGAGTGCATGCAAGGTGATGGTGGCCAGGCTCTGCAGGAGCATGCAACTCGAGCTTTAGCCAACATTTATGGTGGCATGTCTGCTTTAATACTATATCTTGGAGAAGTTTCCCGTTCTCCTCGCCTTGCTGCACCAGTTAGTGATATAATTGGTGCTCTTGCGTATACACTTATGGTCTTTGATAAAAAACTTGATGTTGATAAGGAACATTTTGATGCAACTCAGATAGAGGATATTCTAGTAACCCTTTTAAAGCCTCGAGACAACAAGCTTATTCAAGAGCGTGTCCTTGAGGCCATGGCCAGCCTTTATGGGAATGTCTGTCTCTCGAAGTGGCTCATTCAGGCAGATTCAAAAAAGGTTCTTATTGGACTTATAACTATGGCTGCCCCTGATGTGCAAGAGTATCTGATACATTCATTGACAAGCTTGTGTTGTGATAAGATTGGAATATGGGAGGCCCTAAAAAAAAGAGAAGGTATCCAATTACTGATATCATTGGTGGTATTATCCAGTGAGCAGCATCAAGAGTACTCAGTTCAGTTGCTAGCAATCTTAACTAACCAGGTTGATGACAGCAAGTGGGCAATCACAGCTGCTGGAGGGATTCCACCATTGGTGCAGTTATTGGAGACAGGATCACAGCAAGCAAGAGAGGAAGCAGCTAATGTTCTGTGGAGTTTGTGCTGTCACAGTGAAGATATCCGCACTTGTGTTGAAAGTGCTGGAGCCATCCCAGCATTTTTGTGGCTTCTTAGGAGTGGTGGACCAAAAGGACAAGAAGCTTCTGCTATGGCACTTACAAAGCTTGTCCGAGTAGCTGATTCTGCCACAATTAATCAGCTATTAGCATTGCTCTTAGGGGATTCTCCAAGCTCAAAGGCCCATATAATTCGAGTTTTGGGTCATGTACTTTCTATGGCTTCACAGAAGGATCTCCTTCAAAAGGGTTCTGCAGCTAATAAAGGCCTGAGATCTCTTGTTCAGGTTCTTAATTCATCAAATGAGGAAACCCAAGAATATGCAGCTTCAGTCCTAGCTGATTTATTTAACACAAGACAAGACATTTGTGATAGTCTCGCAACTGATGAGATTGTGCTTCCTTGCATGAAGCTTTTGACTAGCAAAACACAAGTTGTTGCCACTCAGTCAGCTCGAGCATTAAGTGCTCTGACCCGTCCAACAAAGAGCAAAGCTGCAAATAAGATATCTTATATTGTAGAGGGTGATGTCGAGCCGCTAATCAAGTTAGCTAAAACATCCTCTGTTGATGCTGCTGAAACTGCTGTTGCTGCACTGGCCAATCTTCTCTTTGATCCTTTTATTGCTGCTGAGGCTCTAGCTAAAGATGTTGTTTCAGCTTTAACAAGAGTTCTGGCAGAAGGAACCTTGGAAGGTAAACAAAATGCATCTCATGCACTTCATCAGTTATTAAAGCATTTTCCAGTAGGTGATGTGCTCAAGGGGAATGCTCAATGCCGTTTCACTGTGCATGCACTTGTTGATTCATTAAGAGCTATGGATATGGATGGAACTGATGCAGCAGATGCTTTAGAAGTAATTTCACTGCTAGCCAGGACTAAACGGGGTGTCAACTTCACTTACTCTCCATGGTCAGCTCTGGCTGAAATACCGTCAAGCTTAGAACTTCTTGTCTGCTGCTTGGCTCAGGGGCCTTCCCTTGTGCAAGATAAAGCAATTGAAATTCTGTCTAGACTTTGTGGAGATCAGCCAGCTGTTCTTGGTGATTTGTTATTTGCCAATTCCAGATCCATGGGTTCATTGGCTAATAGAATAATAAACTCCTCCAATTTAGAAGTAAAAGTTGGGGGGGCTTCCTTACTAATTTGTGCTACAAAGGAGAAGAAAGGACTTTCAATGGATTCACTCGACACTTCTGGGTATTTGAAACCATTAATAGATTCTTTAGTTGATATGGTGAAGCAGAGTTGTAGCTGTTCTTCATCAGATATTGAAGCTCTCACTCCTAGAGGTTTCATGGAGAGAAATGCATTTCAAGAAGTTGATGAGTTTGATATTCCTGATCCAGCCACAGTCTTGGGAGGTACTGTTTCCCTATGGTTGCTCTCAATTATTGCTTCTTTTCATATGAAAAGCAGGCTCACAATTATGGAAGCTGGTGGACTCGAAGTTCTCTCTGAAAAACTTATGAGACATACTTCAAATCAACAGCAGGCAGAATATGAGGATGCAGAAGGAATATGGATTAGTGCCTTGCTCTTGGCCATTTTATTTCAAGATAAAAATATCATTCTATCACCTACAACAATGCGCATTATACCATGTATCACTCTTCTGCTCAGATCTGATCAAGTAATTGATAAATTTTTTGCCGCCCAGGCTATGGCTAGTCTTGTTAGTCATGGTAATAAAGGAATAGATCTTGCCATTGCAAATTCCGGAGCAGTTGCTGGATTGATAACTATTATTGGGCATATAGAGTCAGAGATGCCAAATCTCATGGCTTTATCAGAAGAATTTTCTTTGGTGCGAAACCCTGATCAAGTTGTTTTAGATCACCTTTTTGAAATTGAAGATGTTAGATTGGGATCTACTGCACGGAAATCTATACCCCTCTTAGTGGATCTCTTGAGACCAATACCAGAAAGACCGAGTGCTCCTCCAGTTGCTGTTAGACTCTTGATATCCATTGCAGATGGAAGTGATACTAATAAATTAATCCTGGCTGAAGCTGGAGCTCTAGAAGCTTTGAACAAATACCTATCTTTGAGCCCTCAAGACTCGACTGAGACCGCCATATCTGAGTTATTGAGAATATTATTCTACAATTCTGACCTTATTAAACATGAAGCATCAACAAGTTCATTGAACCAACTCATAGCTGTTTTGCGTCTTGGATCAAGAAATGCTAGATATAGTGCAGCAAGAGCACTTAATGAACTTTTTTATGCCGATAACATTAGAGACTCAGAATTAGCTAAACAGGCCATTCAACCATTGGTTGACATGCTTAACACAACATCAGGGAGCGAGCAGGAGGCTGCTCTCATGGCCTTGATCAAGTTAACTTCAGGAGATTCTTCAAAAGCATGTCTTTTTACTGATGTCGATGGGAACCCACTTGAAAGTTTGTGCAAAGTATTGTCTTCTGCTTCATCCTTAGAACTGAAGAGCCATGCTGCACAACTTTGCTTTGCTCTTTTTGGTAATAGCAAGATCAGAGCAAATCCAGTTGCCTCAGAATGCCTAGAACCCCTTATATCACTGATGCAGTCTGGTTCTGGGACAGCAATAGAATATGGGGTTTGTGCTTTTGAGAGATTGTTGGAAGATGAACAACAGGTAGAGCTTGCAGCAGCCTATAATGTCGTGGATCTCCTTGTCAGCTTGGTTTCTGGTACGAACTATCAGCTTATTGAGGCTACCATATCTGCTCTCATCAAATTGGGAAAAGACAGGACTCCAAGCAAACATGACATGGTTAAAGCTGGCATTATTAATAATTGTCTCAAGCTACTCCAATCAGCTCCTAGCTCATTATGCTCCACAATAGCTGAGCTGTTTCGCATTTTAACTAATACTAATGCAATTGCTAGAAGTTCAGATGCTGCTGAAATTGTAGAACCCCTTTTCCATGTTTTGCTCCGTCGAGATTTCAACTTATGGGGACAGCATAGTGCCCTACAAGCACTTGTAAATATATTGGAGAAACCACAAAGTCTTGCAACCTTGAAGCTTACTCCTAGCCAAGTCATTGAACCCTTGATTTCCTTTCTGGAATCCCCATCCCAAGCTATTCAGCAGCTTGGCACAGAGCTGTTATCTCATCTTCTTGCACAGGAACATTTTCAGCAAGATATTACAACAAAGAATGCAGTAGTGCCACTTGTACAGCTTGCAGGAATTGGAATATTAAACTTACAGCAAACAGCAATTAAAGCATTGGAAAAAATTTCCACAAGCTGGCCAAAAGCTGTTGCTGACGCGGGAGGTATTTTTGAGCTTGCAAAAGTTATTATTCAAGATGACCCTCAGCCACCACATGCACTTTGGGAATCAGCTGCTTTAGTTCTCTCTAATGTATTACGTTCCAATGCTGATTACTATTTTAAAGTTCCTGTGGTGGTTCTTGTAAAACTCTTGCACTCAACACTTGAGAGTACAATTAGCATAGCCCTTAATGCTTTAACAGTTCATGAAAGAAGTGATGCTTCAAGTGCTGAACAGATGATGGAAGCTGGAGTTATAGATGCTCTGTTGGACCTTTTAAGATCTCATCATTGTGAAGAAGCATCTGGTAGATTACTTGAAGCTTTATTTAACAATGTAAGAGTACGAGAGATGAAGGTGTCAAAGTATGCTATAGCGCCTTTGTCCCAGTATCTCTTAGATCCACAAACCAGATCGCAGTCTGGAAAGCTTCTTGCTGCTTTAGCTCTGGGAGATCTTTCTCAGCATGAAAGACATGCTAGAGCTAGTGGCTCTGTATCTGCATGTCGTGCGCTGATAAGTTTACTTGAAGATCAGCCAACTGAAGAAATGACGATGGTGGCTATATGTGCATTGCAAAACTTTGTCATGAACAGCAGGACCAATAGACGAGCTGTTGCAGAAGCTGGGGGCATACTGGTGATTCAGGAATTGCTACTGTCTCCAAATACAGAAATTGCTGGACAAGCAGCATCATTGATCAAATTTTTGTTTTCTACCCATACTCTGCAAGAATACGTGTCAAATGAGCTGATCAGATCTTTGACAGCTGCACTGGAAAGAGAGTTATGGTCAACTGCCACCATCAATGAGGAGGTTTTGAAAACTCTGCATATGATATTCATGAACTTCCCTAAGCTCCACATATCTGAAGCAGCAACCCTTTGCATTCCTCATTTGGTAGGAGCACTTAAGTCTGGTGGTGAAGTGGCTCAGGACTCTGTACTTGACACCTTTTGCTTGCTAAAACAATCTTGGTCAACCATGCCAATAGATATAGCAAAGTCTCAAGCTATGATTGGTGCTGAAGCCATACCCATCTTGCAAATGCTCATGAAAACCTGCCCGCCAAGTTTCCATGAGAGGGCAGATACTCTTCTGCACTGCTTACCAGGTTGTTTGACTGTCACCATTAAGCGTGGAAACAACCTCAAGCAAACTATGGGAAGCACTAATGCATTCTGCCAGTTGACAATAGGCAATGGTCCTCCGAAACAAACCAAGGTAGTGAATCATAGTACTTCTCCAGAATGGAAAGAAGGATTCACATGGGCATTTGATGTACCACCAAAGGGCCAAAAGCTCCATATCGTATGCAAAAGCAAGAATACTTTCGGGAAGACAACTCTTGGAAGAGTCACTATTCAAATCGATAAAGTTGTGACAGAAGGGGTTTATAGTGGTTTATTCAGTCTTAATCATGATGGCAACAAAGATGGTTCTTCTCGAACACTTGAAATTGAGATTATATGGTCCAACAGGATTTCTAACGATGACAATTGA 6411 0.4173 MSKSPSPDQQQSIYSASQPMEFNEATGMDDPESTMATVANFVEQLHANLSSPLEKELITSHLLGIARRRKDARTLIGSHAQAMPLFINILRNGTPLAKVNVASTLSVLCKDEDLRLKVLLGGCVPPLLSLLKNESTDARKAAAEAIYEVSSGGLSDDRVGMKIFVTESVVPTLWNQLIPKNKEDKVVEGFITGALRNLCGDKDGYWKATLEAGGVDIIVGLLSSDNAVSQSNAASLLARLMLAFSDSIPKVIDSGAVQALLRLLGQENDISVRASAADALEALSSKSTKAKKAIVSADGVPILIGAIVAPSKECMQGDGGQALQEHATRALANIYGGMSALILYLGEVSRSPRLAAPVSDIIGALAYTLMVFDKKLDVDKEHFDATQIEDILVTLLKPRDNKLIQERVLEAMASLYGNVCLSKWLIQADSKKVLIGLITMAAPDVQEYLIHSLTSLCCDKIGIWEALKKREGIQLLISLVVLSSEQHQEYSVQLLAILTNQVDDSKWAITAAGGIPPLVQLLETGSQQAREEAANVLWSLCCHSEDIRTCVESAGAIPAFLWLLRSGGPKGQEASAMALTKLVRVADSATINQLLALLLGDSPSSKAHIIRVLGHVLSMASQKDLLQKGSAANKGLRSLVQVLNSSNEETQEYAASVLADLFNTRQDICDSLATDEIVLPCMKLLTSKTQVVATQSARALSALTRPTKSKAANKISYIVEGDVEPLIKLAKTSSVDAAETAVAALANLLFDPFIAAEALAKDVVSALTRVLAEGTLEGKQNASHALHQLLKHFPVGDVLKGNAQCRFTVHALVDSLRAMDMDGTDAADALEVISLLARTKRGVNFTYSPWSALAEIPSSLELLVCCLAQGPSLVQDKAIEILSRLCGDQPAVLGDLLFANSRSMGSLANRIINSSNLEVKVGGASLLICATKEKKGLSMDSLDTSGYLKPLIDSLVDMVKQSCSCSSSDIEALTPRGFMERNAFQEVDEFDIPDPATVLGGTVSLWLLSIIASFHMKSRLTIMEAGGLEVLSEKLMRHTSNQQQAEYEDAEGIWISALLLAILFQDKNIILSPTTMRIIPCITLLLRSDQVIDKFFAAQAMASLVSHGNKGIDLAIANSGAVAGLITIIGHIESEMPNLMALSEEFSLVRNPDQVVLDHLFEIEDVRLGSTARKSIPLLVDLLRPIPERPSAPPVAVRLLISIADGSDTNKLILAEAGALEALNKYLSLSPQDSTETAISELLRILFYNSDLIKHEASTSSLNQLIAVLRLGSRNARYSAARALNELFYADNIRDSELAKQAIQPLVDMLNTTSGSEQEAALMALIKLTSGDSSKACLFTDVDGNPLESLCKVLSSASSLELKSHAAQLCFALFGNSKIRANPVASECLEPLISLMQSGSGTAIEYGVCAFERLLEDEQQVELAAAYNVVDLLVSLVSGTNYQLIEATISALIKLGKDRTPSKHDMVKAGIINNCLKLLQSAPSSLCSTIAELFRILTNTNAIARSSDAAEIVEPLFHVLLRRDFNLWGQHSALQALVNILEKPQSLATLKLTPSQVIEPLISFLESPSQAIQQLGTELLSHLLAQEHFQQDITTKNAVVPLVQLAGIGILNLQQTAIKALEKISTSWPKAVADAGGIFELAKVIIQDDPQPPHALWESAALVLSNVLRSNADYYFKVPVVVLVKLLHSTLESTISIALNALTVHERSDASSAEQMMEAGVIDALLDLLRSHHCEEASGRLLEALFNNVRVREMKVSKYAIAPLSQYLLDPQTRSQSGKLLAALALGDLSQHERHARASGSVSACRALISLLEDQPTEEMTMVAICALQNFVMNSRTNRRAVAEAGGILVIQELLLSPNTEIAGQAASLIKFLFSTHTLQEYVSNELIRSLTAALERELWSTATINEEVLKTLHMIFMNFPKLHISEAATLCIPHLVGALKSGGEVAQDSVLDTFCLLKQSWSTMPIDIAKSQAMIGAEAIPILQMLMKTCPPSFHERADTLLHCLPGCLTVTIKRGNNLKQTMGSTNAFCQLTIGNGPPKQTKVVNHSTSPEWKEGFTWAFDVPPKGQKLHIVCKSKNTFGKTTLGRVTIQIDKVVTEGVYSGLFSLNHDGNKDGSSRTLEIEIIWSNRISNDDN. 2137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02422 2136 SUPERFAMILY ARM repeat 72 309 IPR016024 -
Seca8g02422 2136 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2007 2113 IPR035892 -
Seca8g02422 2136 Gene3D - 1345 1605 IPR011989 -
Seca8g02422 2136 SMART arm_5 1544 1585 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 544 584 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 1459 1499 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 287 336 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 1376 1416 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 111 151 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 1207 1247 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 502 542 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 751 791 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 244 285 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 710 750 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 1835 1875 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 158 200 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 1709 1750 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 1417 1457 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 1291 1330 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 623 663 IPR000225 GO:0005515
Seca8g02422 2136 SMART arm_5 201 242 IPR000225 GO:0005515
Seca8g02422 2136 ProSiteProfiles C2 domain profile. 1989 2106 IPR000008 -
Seca8g02422 2136 PANTHER PROTEIN CELLULOSE SYNTHASE INTERACTIVE 1 15 2130 IPR044297 GO:0008017|GO:0010330|GO:0051211|GO:2001006
Seca8g02422 2136 Gene3D C2 domain 2010 2134 IPR035892 -
Seca8g02422 2136 SUPERFAMILY ARM repeat 857 1129 IPR016024 -
Seca8g02422 2136 Gene3D - 709 980 IPR011989 -
Seca8g02422 2136 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 513 555 IPR000225 GO:0005515
Seca8g02422 2136 SUPERFAMILY ARM repeat 1558 1997 IPR016024 -
Seca8g02422 2136 CDD C2 2010 2100 - -
Seca8g02422 2136 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 255 299 IPR000225 GO:0005515
Seca8g02422 2136 SMART C2_3c 2009 2105 IPR000008 -
Seca8g02422 2136 MobiDBLite consensus disorder prediction 1 22 - -
Seca8g02422 2136 Pfam C2 domain 2009 2108 IPR000008 -
Seca8g02422 2136 Gene3D - 1166 1344 IPR011989 -
Seca8g02422 2136 Gene3D - 157 481 IPR011989 -
Seca8g02422 2136 Gene3D - 1611 2009 IPR011989 -
Seca8g02422 2136 Pfam Armadillo/beta-catenin-like repeat 506 541 IPR000225 GO:0005515
Seca8g02422 2136 SUPERFAMILY ARM repeat 1226 1625 IPR016024 -
Seca8g02422 2136 SUPERFAMILY ARM repeat 319 483 IPR016024 -
Seca8g02422 2136 Gene3D - 483 708 IPR011989 -
Seca8g02422 2136 Gene3D - 28 156 IPR011989 -
Seca8g02422 2136 SUPERFAMILY ARM repeat 470 1113 IPR016024 -
Seca8g02422 2136 MobiDBLite consensus disorder prediction 1 30 - -
Seca8g02422 2136 Gene3D - 1002 1146 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02422 Seca-Chr8 51811449 51822829 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02422 473 714 U-box Gene Family AT2G23140 28.514 4.16e-10 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02422 - - gmx:100780150 3665.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g02422 8 51811449 51822829 Seca8g02422 8 51811449 51822829 ECH