Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02409 ATGGAGCTTGTGAATACCCAAAAGCTACAGCTACAACAGCATTTTCATGTATTAGTGGTAGATGATAGTGTCATAGACAGGAAGCTATTGGAGAGACTCTTGAGAGATTCTTCATGCAAAGCTACCTTTGTGGACTCTGGAGATAAGGCTCTGAAATATCTTGGCCTGCTTGATGAACTTGATAATGCTTCCTCAATTTCTTCAGAAACATTGCAACAAGATGGAATCAAAGTAAATTTGATCATGACAGATTACTGCATGCCAGGGATGAGTGGCTATGATTTACTCAAAAGAATCAAGCAGGGATCTTCTTGGAAAGATGTACCAGTCGTCATTATGTCATCAGAAAATGTACCATCCAGAATCAGCATGTGCTTAGAAGGAGGGGCAGAGGAGTTTCTATTGAAGCCTCTTCAGTTATCAGATTTGAAGAAGCTTCAACCGTTCTTTCTGAAACCCTTTGATAATTCCAGTAAACAAGAATCTGTTAACAGTTCTATAGCATCTTACAATGACAATGATAATTACAATAGTACTAATGATAGCATTAGTAAAACGAAGGTGATGTCTCCGGAGCATGGTTTTAAATTACAGTTTGCATCTACAATTGCAGCTACAATACTACGGTTTTGGAGGTCTCTGTAA 645 0.3829 MELVNTQKLQLQQHFHVLVVDDSVIDRKLLERLLRDSSCKATFVDSGDKALKYLGLLDELDNASSISSETLQQDGIKVNLIMTDYCMPGMSGYDLLKRIKQGSSWKDVPVVIMSSENVPSRISMCLEGGAEEFLLKPLQLSDLKKLQPFFLKPFDNSSKQESVNSSIASYNDNDNYNSTNDSISKTKVMSPEHGFKLQFASTIAATILRFWRSL. 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02409 214 SMART REC_2 15 147 IPR001789 GO:0000160
Seca8g02409 214 PANTHER TWO-COMPONENT RESPONSE REGULATOR 15 180 IPR045279 GO:0009736
Seca8g02409 214 Gene3D - 16 168 - -
Seca8g02409 214 SUPERFAMILY CheY-like 15 146 IPR011006 -
Seca8g02409 214 CDD REC_typeA_ARR 17 146 - -
Seca8g02409 214 Pfam Response regulator receiver domain 17 145 IPR001789 GO:0000160
Seca8g02409 214 ProSiteProfiles Response regulatory domain profile. 16 151 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02409 Seca-Chr8 51459480 51462395 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02409 9 166 Response Regulator Gene Family AT3G57040 54.375 1.97e-60 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca8g02409 Response_reg 2.1e-19 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02409 K14492 - gmx:100790440 311.612