Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02405 ATGACCACGCAACAACTGATCACCCTGGTGTTAATGATTGCAATATTAGCAAGAGCGGGAGGAGCAGCAGCACTTGATGATAAAGCCCTACCTGGTTGCATAGACACATGCGGAAACGTTTCAATTCCATATCCATTTGGCGTAGGCAAATCTTCTAAAACAGGTGAGAACTGTTTCTTGGAAGAAAGATTGAACCTTACCTGCGACAATAACTCTTTGTATCAAGGCAACACTCAAGTCCTAAACATAGACCTCCTCAAAGGCCAATATGAAATATCTTTTTTTGTTTCAAAGCTTTGCAATGATACAACAAGAGCTAATCAGCCTTATCTTCAGACTCCTGCTTTTACCATCTCTAGCAAAGAAAACCAGTTCATAAGTGTTGGCTGCAACACTTATGGCTATCTCAATAGCTATCACAACGGAGATGAATATTCAACGGGGTGTATAACGAGATGTAGCAGGTTACCTGATACGATCAAAGATGGAGAGTGTTCAGGGATAGGGTGTTGTGAGGTGGATATTCCTTCTCAAATGAAGAATATTACTATACAGACATTTAGCTTTAACTCTATGAATTTCAGTGGCTGTAGCTATTCCTTTGTTGCCAAACGAGGCTCATATAACTTTTCTGTTAGTCACTTGGACAAGCTGCCCTTTGATGAGATTCCTATGGTTGTTGATTGGACTGTTGGAAAGGAAAATGAAACATGTGGAGTTTTCAAGGAAGGACACAAAAGTGCCTGCATGAATAATAGCTATTGTGACGATGGTGAGACTAGTTATGGATACCGGTGCAGATGTAAACCTGGTTTTGATGGAAATCCATACCATCCCAATGGTTGCCAAGACATTGACGAATGCAAGACAAAAAATCATACATGCATTAGTGATCTTCATTGTCGCAACATTGATGGGTCTTACGAATGTTTTTGTCCTCCTGGAAAAGTTGGAAATGGAAGAAACACAGGAGGATGCCAACCAATTCGCGATCGGCACGAAAGTGTTCTAACCAAGGTAGCCATTGGTGGATGTGTTGGACTTATAGCTCTATTGGGTGCTTCCTGGTTATACTTAATCTATCAAAAAAGGAAACTCACAAAACAAAGAGAGAAATTCTTTCAACAAAATGGTGGTTTCATTTTGCAACGAAGACTCTCTTCAAGAGAAGACTTCCATCAAATTGCTCAAATTTTCACAGCTGAAGAGTTGAAAAAGGCCACCAACAACTACAATGAGAGCTTAATCATTGGAAAAGGAGGTTTTGGTACAGTTTTCAAAGGATTTCTTGCTAATAATAGGATTGTTGCTGTGAAGAAGTCCAAAGTAGTGGATCAAAACCAAGCTGAACAATTCATCAACGAAGTGATTATTCTATCCCAAATCAATCACAGGAATGTGGTAAAACTCTTGGGTTGTTGTTTAGACACTGAAGTCCCATTATTGGTTTACGAATTTGTTAACAATAGTACCCTTTATGATCACTTACACAATGAAAGCAAGATAGGTAATCTCACTTGGAAGACTCGTCTAAGAATAGCTATAGAGACTGCTGGAGCATTATCATATTTGCATTCAGATGCTTCAATAACCATTATCCATAGGGATGTGAAGAGTTCTAACATTCTTTTGGATCACAATTATACTGCTAAAGTGTCTGATTTTGGAGCTTCAAAGTTGGTTCCACTTGATCAAGCTGAATTAGCCACAATGGTACAAGGGACATTCGGTTACTTGGACCCTGAGTACATGCAAACAAGTAGGCTCACTGAGAAGAGTGATGTTTATAGCTTTGGAGTAGTGCTTGTAGAACTTTTAACAGGGCAAAAAACAGTTTCATTTCAGAGGCCAGAAGAAGAAAGAAGTCTTGCCCTGCATTTTCTGTCTTACTTGGAAGATGGTAGATTGTTTGAAATTCTTGATTTTGGTCTTTTGAATGAATAA 1944 0.3899 MTTQQLITLVLMIAILARAGGAAALDDKALPGCIDTCGNVSIPYPFGVGKSSKTGENCFLEERLNLTCDNNSLYQGNTQVLNIDLLKGQYEISFFVSKLCNDTTRANQPYLQTPAFTISSKENQFISVGCNTYGYLNSYHNGDEYSTGCITRCSRLPDTIKDGECSGIGCCEVDIPSQMKNITIQTFSFNSMNFSGCSYSFVAKRGSYNFSVSHLDKLPFDEIPMVVDWTVGKENETCGVFKEGHKSACMNNSYCDDGETSYGYRCRCKPGFDGNPYHPNGCQDIDECKTKNHTCISDLHCRNIDGSYECFCPPGKVGNGRNTGGCQPIRDRHESVLTKVAIGGCVGLIALLGASWLYLIYQKRKLTKQREKFFQQNGGFILQRRLSSREDFHQIAQIFTAEELKKATNNYNESLIIGKGGFGTVFKGFLANNRIVAVKKSKVVDQNQAEQFINEVIILSQINHRNVVKLLGCCLDTEVPLLVYEFVNNSTLYDHLHNESKIGNLTWKTRLRIAIETAGALSYLHSDASITIIHRDVKSSNILLDHNYTAKVSDFGASKLVPLDQAELATMVQGTFGYLDPEYMQTSRLTEKSDVYSFGVVLVELLTGQKTVSFQRPEEERSLALHFLSYLEDGRLFEILDFGLLNE. 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02405 647 Gene3D Transferase(Phosphotransferase) domain 1 487 647 - -
Seca8g02405 647 Pfam Wall-associated receptor kinase galacturonan-binding 33 87 IPR025287 GO:0030247
Seca8g02405 647 SUPERFAMILY Protein kinase-like (PK-like) 392 641 IPR011009 -
Seca8g02405 647 SMART egf_5 287 327 IPR000742 -
Seca8g02405 647 SMART egf_5 237 283 IPR000742 -
Seca8g02405 647 ProSitePatterns Serine/Threonine protein kinases active-site signature. 532 544 IPR008271 GO:0004672|GO:0006468
Seca8g02405 647 Pfam Protein kinase domain 412 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02405 647 FunFam Wall-associated receptor kinase 2 381 486 - -
Seca8g02405 647 ProSiteProfiles Protein kinase domain profile. 411 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02405 647 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 301 312 IPR000152 -
Seca8g02405 647 Pfam Calcium-binding EGF domain 284 320 IPR001881 GO:0005509
Seca8g02405 647 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 642 IPR045274 GO:0007166
Seca8g02405 647 CDD EGF_CA 284 318 - -
Seca8g02405 647 Gene3D Laminin 236 326 - -
Seca8g02405 647 Gene3D Phosphorylase Kinase; domain 1 378 486 - -
Seca8g02405 647 ProSiteProfiles EGF-like domain profile. 284 327 IPR000742 -
Seca8g02405 647 ProSitePatterns Calcium-binding EGF-like domain signature. 284 310 IPR018097 GO:0005509
Seca8g02405 647 SUPERFAMILY EGF/Laminin 283 322 - -
Seca8g02405 647 FunFam Wall-associated receptor kinase 2 487 647 - -
Seca8g02405 647 ProSitePatterns Protein kinases ATP-binding region signature. 417 440 IPR017441 GO:0005524
Seca8g02405 647 SMART serkin_6 411 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02405 647 SMART egfca_6 284 327 IPR001881 GO:0005509
Seca8g02405 647 ProSiteProfiles EGF-like domain profile. 234 283 IPR000742 -
Seca8g02405 647 FunFam Fibrillin 2 279 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02405 Seca-Chr8 51321526 51326334 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02405 10 647 Receptor kinase-like Gene Family AT1G21230 45.122 4.59e-175 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca8g02405 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02405 - - gmx:100819535 804.668