Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02401 ATGACATGTATCAGGAGTTATTTGTTTTCTTCCATTTCAGTTTCTTCATGGTTCTGTTTTGTTATCAGTGTTCAGAAATCTAATTGCTTCATTTCAATGTGTGTAATATGGCAGGGGGAACGAATTGAAGCCACCGTGCAACGTCCTCTGATGAACAAGTTTAGGAATGGTTTATTTGAGGGTCAAGTTTATAAGGTCACTCAGTTTGGGCTCATGCGAAATGAAGGGATGTTTCGAGCTGCGCCCCATGAGTTTAGGCTACTGTTTAATGCAACCACTAAGCTGATTCCCTGTCAGAATCCTAGGATTCGGTCGTTGGGCCTTGCTCTGATGAAGACTTCAGACATAGCGCAGACAAATGGGCGGTCTAATTTCTTGCTTGATTTTATGGGTGTCCTAACTGCTGTCTCCGAGGAGTTGCATCTGAATAAGGAGGGACGACAAACTCGAATGATGCTCCTAGATTTAGTTGACGAGATGGGAAAGGTTCGATGTGCTATATTTGGAGACTTGGTTGATGTGGTTTGTGGATTTTTACCTTCATCTATGCCTGGTCTACCTGTTGTTGTGATTCAGCTAGCAAGGGTGAACTTTTATAAGGGCCAAGTTGGCATCCAAAATGTGATGAATGCCACTAAGATTTCTTGGAATCCAGATTGGCCAGTTGCTGTTGAATTTAAGAATAGCCTTGTTGTACACGAGGTTGAAACAGATCTCTGTGTTGGGACTATATCAGATAGAGGCCGTGCAGAGGGATCATTTGTTGTGTTGGGGACCATTATAGAGATTATTCAGGAATCTTCATGGTGGTACATGGCATGCACGTGCATGAGGGCAGCTTCATATGAGCCTGGTTTCCCTTACTGTGATGATTGTAAGACTGTTTTGTTTGAGCTTACACCTAGGTACAAGTTGAAGGTTGTTGTATCTGATGGTTTTGAAAGTGCTCAGTTGCTAATGTTTGACTCAGAGTGTTTCACTTTCTTAGGAAAGCCTTGCAAAGAAATGGTTTTAATCAGTCAAGCACAAGGATTGGCCTCAGGTGAATTTCCTACCGAAATGAAAGGCTTGGTTGGGAAAGAATTTCTTTTCCGAGTAGAGAACAAGGATGGGCTATTCTTTGGACTGGATGACTCCTTCAAGGTTAAGAGGGCATGCTACGAAGCCTCTATAATAGACGAATATAAGGAAGATTTGGATGATGAGACGCCTCTGAAGCTGAAATTCGCTCCTCCGTTTACCAATATGGCTAATATAGAAGGTGAGAGTTGCCGTAATGATCTAACCAGTCATATTAATGATGCTGCAACCGTGTTGGATGTGTCCCCTATTTCCATTGCTCAATCTATTTCAACTGGTGCACAAACTGAATCATCTCCTGATGAAGGAGTTGAGGGAAACAAAAGGCAACTTGAGAGCCCTGCTGATGCTTCTAGCGACAGGATGAAGACGGAGAAATAG 1461 0.4271 MTCIRSYLFSSISVSSWFCFVISVQKSNCFISMCVIWQGERIEATVQRPLMNKFRNGLFEGQVYKVTQFGLMRNEGMFRAAPHEFRLLFNATTKLIPCQNPRIRSLGLALMKTSDIAQTNGRSNFLLDFMGVLTAVSEELHLNKEGRQTRMMLLDLVDEMGKVRCAIFGDLVDVVCGFLPSSMPGLPVVVIQLARVNFYKGQVGIQNVMNATKISWNPDWPVAVEFKNSLVVHEVETDLCVGTISDRGRAEGSFVVLGTIIEIIQESSWWYMACTCMRAASYEPGFPYCDDCKTVLFELTPRYKLKVVVSDGFESAQLLMFDSECFTFLGKPCKEMVLISQAQGLASGEFPTEMKGLVGKEFLFRVENKDGLFFGLDDSFKVKRACYEASIIDEYKEDLDDETPLKLKFAPPFTNMANIEGESCRNDLTSHINDAATVLDVSPISIAQSISTGAQTESSPDEGVEGNKRQLESPADASSDRMKTEK. 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02401 486 MobiDBLite consensus disorder prediction 462 486 - -
Seca8g02401 486 MobiDBLite consensus disorder prediction 449 486 - -
Seca8g02401 486 SUPERFAMILY Nucleic acid-binding proteins 110 230 IPR012340 -
Seca8g02401 486 Gene3D - 240 397 IPR012340 -
Seca8g02401 486 SUPERFAMILY Nucleic acid-binding proteins 38 100 IPR012340 -
Seca8g02401 486 Gene3D - 103 236 IPR012340 -
Seca8g02401 486 Pfam Replication factor-A C terminal domain 259 388 IPR013955 -
Seca8g02401 486 CDD RPA1_DBD_C 247 385 IPR047192 -
Seca8g02401 486 SUPERFAMILY Nucleic acid-binding proteins 251 393 IPR012340 -
Seca8g02401 486 CDD RPA1_DBD_A_like 38 94 - -
Seca8g02401 486 Gene3D - 21 100 IPR012340 -
Seca8g02401 486 Pfam Domain of unknown function DUF223 38 100 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02401 Seca-Chr8 51052719 51055153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02401 37 336 Core DNA Replication Machinery Family AT2G06510 22.849 9.91e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02401 - - lja:Lj1g3v3385890.1 295.819