Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g02397 ATGACCACCCAACAACTTGCCCTGCTGGTGTTGGTGTTAATGATTGCAATATTAGTAAGGGTGGGAGGAGCAGCTGGTAACGCCCTACCTGGTTGCATAGACACATGTGGAAGCGTTTCAATTCCATATCCATTTGGCGTAGGCAAGTCTTCCAAAACAGGTCATAACTGTTTCTTGGAAAAATGGTCGAGCCTTACCTGCAGTAATAACACTTTATATAACGGGAATGTCCGAGTTTTAAACATAGGCCTCCTCGAAGGCCAATTGGAAATGATGTTTTATGTCTCACAGCTTTGCAATGATACCGAAGATGGAGAATTTAATCCGCCCTCCCTTAGCACTGCTTCTTTTACCATCTCTAGCAAAGAAAACCAGTTCATTAGTGTTGGTCGCAACACCTACGGCTATCTCAATAGCTTTGGCGACGGGGAAGAGTATTCAACGGGGTGCTTAACAAGATTTAGTAAGTTACCTCATACGGTGAAAGATGGAGAGTGTTCGGGGATAGGGTGTTGTGAGGTGGATATTCCTTCTCAAATGAAGAATATCACTATACAGACATATAAATTTATGAATTTCAGTGGCTGTAGCTATTCCTTTGTTGCCAAACGAGGCTCATATAACTTTTCTGTTAGTCATTTGGACAAGCTGCCCTTTGATGAGTTTCCTATGGTTGTTGATTGGACTGTTGGAAAGGAAAATGAGAGATGTGAATTTTTCAAGGATGGACAGAAAAGTGCCTGCATGAGTAATAGCTATTGTGACGATGCTGACACTAGTTATGGATACCGATGCAGATGTAAAACTGGTTATGATGGAAACCCATACCATCCCAATGGTTGCAAAGGTTTGTTTTATGACCAACTTGTAGATATTAATGAATGCAAGACAAAAAATCATACATGCATTAGTGATCTTCATTGTAGCAACATTGATGGGTCTCACGAATGTTTTTGTCCTCCTGGGCAAGTTGGAAATGGAACAAAGTCGGGAGGATGCCAACCAATCCGACACGAAAGTATACTTACCAAGGTAGCCATTGGTGTATGTGCTGGACTTATAGCTCTATTGGGTGCTTCCTGGTTATACCTAATCTATCAAAAAAGGAAACTCATAAAACAAAAAGAGATATTTTTCCAGCAAAATGGTGGTTTTATTTTGCAACGAAGACTCTCTGAAAGAGAAGACTCCCACCAAATTGCTCAAATTTTCACAGCAGAAGAGTTGAAAAATGCCACCAACAACTACAACGAGAGCTTAATCATTGGAAAAGGAGGTTTTGGAACAGTTTTCAAAGGATTTCTTACTAATAATAGGATTGTTGCTGTGAAGAAGTCCAAAGTAGTTGACCAAAACCAAGCTGAGCAATTCATCAACGAAGTGATTATTCTATCCCAAATCAATCACAGGAATGTGGTGAAACTCTTGGGTTGTTGTTTAGACACTGAAGTCCCATTATTGGTTTACGAATTTGTTAACAATAGTACCCTTTATGATCACTTACACAATGAAAGCAAGATAGGTAATCTCACTTGGAAGACTCGTCTAAGAATAGCTATAGAGACAGCTGGAGCATTATCATATTTGCATTCAGATGCTTCAATAACCATTATCCATAGGGATGTGAAAAGTTCCAACATTCTATTGGATGACAATTACACTGCCAAGGTGTCTGATTTTGGAGCTTCAAAGTTGGTTCCACTTGATCAAGTTGAATTAGCCACAATGGTACAAGGGACTTTTGGTTACTTGGACCCTGAGTACATGCAAACAAGTAGGCTCACTGAGAAGAGTGATGTCTATAGCTTTGGAGTAGTGCTTGTAGAACTGCTAACAGGTCAGAAAGCAGTTTCATTTCAGAGGCCAGAAGAAGAAAGAAGTCTTGCCTTGCATTTTCTGTCTTACTTGGAAAATGGTAGATTGTTTGAAATTCTTGATTTTGGTCTTTTGAATGAAGAAAATAGGGAGGAGATTCAGGAAGTTGCTGTTCTTGCAAGTAAGTGCATGGGACTTAAAGGGGATGAGAGGCCTAGCATGAAGCAAGTGGAAATTGAGCTGAAGGGAATAAGGAAAATAGAGAAGCACCCATGGACCAATATAGACCTGAATTTGGAGGAGTCTCAACACTTACTTCCTGAGGTATCTGGCATTTATAGGCATGGTGATAGCACCAACTATGGAAATACTGAGTATGACAGCTTGAGGGACCATGTACAAGTTGCCTTTGAAATTGCACGTTAA 2241 0.4016 MTTQQLALLVLVLMIAILVRVGGAAGNALPGCIDTCGSVSIPYPFGVGKSSKTGHNCFLEKWSSLTCSNNTLYNGNVRVLNIGLLEGQLEMMFYVSQLCNDTEDGEFNPPSLSTASFTISSKENQFISVGRNTYGYLNSFGDGEEYSTGCLTRFSKLPHTVKDGECSGIGCCEVDIPSQMKNITIQTYKFMNFSGCSYSFVAKRGSYNFSVSHLDKLPFDEFPMVVDWTVGKENERCEFFKDGQKSACMSNSYCDDADTSYGYRCRCKTGYDGNPYHPNGCKGLFYDQLVDINECKTKNHTCISDLHCSNIDGSHECFCPPGQVGNGTKSGGCQPIRHESILTKVAIGVCAGLIALLGASWLYLIYQKRKLIKQKEIFFQQNGGFILQRRLSEREDSHQIAQIFTAEELKNATNNYNESLIIGKGGFGTVFKGFLTNNRIVAVKKSKVVDQNQAEQFINEVIILSQINHRNVVKLLGCCLDTEVPLLVYEFVNNSTLYDHLHNESKIGNLTWKTRLRIAIETAGALSYLHSDASITIIHRDVKSSNILLDDNYTAKVSDFGASKLVPLDQVELATMVQGTFGYLDPEYMQTSRLTEKSDVYSFGVVLVELLTGQKAVSFQRPEEERSLALHFLSYLENGRLFEILDFGLLNEENREEIQEVAVLASKCMGLKGDERPSMKQVEIELKGIRKIEKHPWTNIDLNLEESQHLLPEVSGIYRHGDSTNYGNTEYDSLRDHVQVAFEIAR. 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g02397 746 FunFam Fibrillin 2 287 331 - -
Seca8g02397 746 Gene3D Laminin 234 333 - -
Seca8g02397 746 Pfam Protein kinase domain 417 682 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02397 746 CDD EGF_CA 291 325 - -
Seca8g02397 746 Gene3D Transferase(Phosphotransferase) domain 1 492 706 - -
Seca8g02397 746 CDD STKc_IRAK 422 689 - -
Seca8g02397 746 ProSitePatterns Serine/Threonine protein kinases active-site signature. 537 549 IPR008271 GO:0004672|GO:0006468
Seca8g02397 746 SMART egf_5 294 334 IPR000742 -
Seca8g02397 746 SMART egf_5 236 282 IPR000742 -
Seca8g02397 746 SUPERFAMILY Protein kinase-like (PK-like) 398 683 IPR011009 -
Seca8g02397 746 FunFam Wall-associated receptor kinase 2 386 491 - -
Seca8g02397 746 ProSiteProfiles Protein kinase domain profile. 416 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g02397 746 ProSiteProfiles EGF-like domain profile. 291 334 IPR000742 -
Seca8g02397 746 FunFam Wall-associated receptor kinase 2 492 709 - -
Seca8g02397 746 Pfam Calcium-binding EGF domain 291 333 IPR001881 GO:0005509
Seca8g02397 746 SUPERFAMILY EGF/Laminin 290 328 - -
Seca8g02397 746 SMART egfca_6 291 334 IPR001881 GO:0005509
Seca8g02397 746 Gene3D Phosphorylase Kinase; domain 1 385 491 - -
Seca8g02397 746 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 28 692 IPR045274 GO:0007166
Seca8g02397 746 ProSitePatterns Protein kinases ATP-binding region signature. 422 445 IPR017441 GO:0005524
Seca8g02397 746 SMART serkin_6 416 698 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g02397 Seca-Chr8 50868768 50874181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g02397 1 746 Receptor kinase-like Gene Family AT1G21230 44.141 0.0 556
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Seca8g02397 Pkinase 9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g02397 - - gmx:100819535 874.004